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Mouse element [ mm2212 ]


Position: chr9:63,885,194-63,889,927 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad6 - 1110036E04Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCTTGTGAAGGTCAGTCCGggagctcctttccttctgcctggtgctgacaaggtgaaaa
tatggcggtctgcagactggtcaagcagccctgggcagacactaaatctgccagtctacc
agggttgtggtttgtatgtctctctcaggtcccagtttccttctacaactctctctcccc
ctctccctcccccccacacctgccccctactagtgagatttttcagatctaagcatcatg
gcttggcctatagttccaccacttaggatgagagactgaggattaagagctcaaggccag
cctgagttaccgggacagtctgaggcctgcttgaagctatataagactctgttaaaataa
gcaaactttcacattcaaaagccagatgtgtaaccagtaccccagagctcttgactctag
ctgcatatgtatcaaaagatggcctagtcggccatcactggaaagagaggcccattggac
acgcaaattttatatgccccagtacaggggaacgccagggccaaaaagggggagtgggtg
ggtaggggagtgggggtgggtgggtatgggggacttttggtatagcattggaaatgtaaa
tgagctaaatacctaataaaaaatttaaaaaaaaaaaagccagatgtatgtgatgcgagt
atggtatgccctgtggaggccaggcgttgtgggtcccctgaagtgacagttacaggaggt
cgtgagcatcccaccataggtgctggaagctaaacttgggtctgcagatgtagcaggtac
tcttaaccactgaaccatctctccagcccctctctggtctttcttggtgtcagaaaggtc
aaaaaccatgaaaatattcgtagttgagaaggtcacctaaaccctggctattggttgcaa
tgccccagtcctcccgcttggaaacgccctctgaactcagtcgtggtctggaaacacagg
ccaatgaagtgtaagcagaactaataatggggctaagcacttctgtgtacaacacataga
agcagggtggggttgacaccatccccttatacttctgctgtcactggggaagcaggtcgg
cttggcacttcgtgtcatttattcattcgatcagatgtgccaatggcaaacgtggtagat
gtttctgtgcttcttgggacacgtcagtccctgcacgcgggagggcacactcttcctctg
gtgagcttgctttttactgatatccgtgaggactctatcactccccccaggaaaggataa
gaaggggaaagggaaggaggagagagaaagacattatttaaaagactgcccctcaggacc
agaatttagggttgaaactgggttttaaacttattcaacctttatcatgtctattgaaaa
agcgtggctcaaggagacaagccagcttgcctatagtctcacagctatgaaataatagta
aacccgattactcgagcatattctagtaaaatggcaggtcctgttccacctacctccaca
gaggtcaccctattggggtcagcactgcccgggctaaggaagcaggataggtcagagagg
ttaggtttcttttgtcagtttgacataagctacactgtagctatcttcagacacaccaga
agagggcattgaaccccattacagatggttgtgagccattatgaggttgctgggaattga
actcagaacttctggaaggacagccagtgctcccacctgctgagccatctctccagcccc
taggaagagaaactcttaactgataaaatgcttccagaatattagcctgcagataagcct
gtgaggcattattattattattattattattattattattattatttgaggtgggaagtg
ctaccactgagcagggcatcctgggtggtataagaaagcaggtaggccagggctatacag
agaaaccctgtctcgaataaccaaaaaaaagaaaaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagcaagcaagcaggtagggcaggccatggagagttc
actgcattcttctacttcctctacttctgtttctgcctcaagttccttcccttacttccc
tgaccatggactgtgacaacgaagtatagccaaataaaccctttcttccccagttgctta
tacagcaatagaatgcaaactaatgaaactggttagagtccaggatgtgaaattagatgt
cctggccccagctgggccctcctacctggatgactttaatataccaagctttgccttcat
ctgtggaaggagatgatgcttacactaacacaaaccaagcgccaggcacacagacaggtc
ccagggatttagttctgactaagcttctttgtctctgctcatctcaacagtcgaggatgc
ctaacagacctctaatggagagaaggatacggacagaacaggataccaagtgagtgacct
catttggaaagtcaggaactaagccaggtgaggttgcacatgcctcttgtgctgcctctc
agcacccaggaggcagaggcaggaggatctcctgattttgagatcagcctggtctacaga
gcaagttacaggacagtcagggctacacagagaaaactgtgtagaaaagaactgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacttccatagactccctgc
tggatgttgagagttctctgcatcttctcccaaggttctcagttctctgtggcaccccct
cccgactccactctctctggctgggcttcctcccttttcttttctcactaaaatgatata
acagcatggactagtgccagcctgggctacttcttcaccaggatgcagctctcgggtctt
ctccaaagctgtagccagctccccacctgggccttctgattgagctatcctcagcccttc
cctgaccctactcatcaatgatcctccaggaaaagccagcaagggaaggaggggagaaag
agagagagagacaggaacagggactggaagagagctctgtagcccttttggtacctaaag
tatcagccaacagcagccaatgcagcacactgtgtgttagaaatgtacagcccatgctca
gtggaagacagtaagtaactgggcacagtattgctaggagctgtgggaagaagagttatt
gaggccatgtcgaaagatgtctgtccgtccaggcttggtcctgggctagagcaggtggta
aaaaaccagctgtggcaggagtgtgcaacctctccctaggccaggctccaaacctacaaa
tgtttggccaaagcaggttacacaaaaatccaattctagactgaaaagatggtgagggag
acaccagctcttgccaggaagaggctcagccattaccaagggcacagaccctactggaga
aatctgtccatttctttatttctgcaaagagacacacagttttcccctgttcctgataac
tctgtcctggagtgtcaggatatggaggctcctttgatccttcccagctaccctgcctgc
cttggcctctgcctgttgccagcctgctggtgttcaaagcttaatgcccctgcttccttt
tctttcactgtggtgacaaattaaaaagacagtgtctttactgcaatcccaatccatttc
ctcccagttctgagagtctgaaatgcacgggtatccttgggctcaaatctaagtgtagcc
agagctgcccacctattctttaacactacattgtatctacttatttggagtaagccttcc
atgacataacatgcatgtgtgtgtgtgtgggggggggggggttgtcaaaggacaacttgc
cagagccagttgtctcctttccccttgtaggtgtggggaactgaactgtgtttgtcaggc
ttggctgcaagtgccctcacctgccgaactgtctcagcagcccaactctgggcttttgag
gaagcttgaggggagaaagaattcacccacttgccctgtccaacttctagcggtggcctg
ccttgcctggctcgtgtctcctccacagtggccggtagaatatcagtcacacgccttctg
actgtccttctgacggggttctgactgttgcacctaggatggctcttgtgacttcaagcc
tccctatgatccaggacaatctctctgtgacagagtcagctgattaacaacccagatcca
ccctacctttattctccctgactgtgttaccttacatatccccaggtttcagggactcag
tctttgggccatcattcagccaaactcccatctcctcctcacccctaggtccttgtgaat
gatgtccacgggcacatttatagggcatttactgtatgccttgccagaacccctcaccca
acttctctctaaagttctctaaacaaccatcctgtctgtgcatgccttggggggagcttc
ccatattgagatctcattttataaactcagaggctaagtcgctccccaaggcttcacaga
gagcacgtgctggatattgagctggtcctggcagtgtatgcctgtcatcccagttactca
agagtctgaggcaagaggatagcaagttcaaagtcagcctgcctagaaagtttggtgaga
ctagttaatattgattatcagcgtgacagaatctagagcagcggtcctcagccttcctaa
tgctgtatgaccctttcatacagttgctcacgctGTGGTGACCCCGAAGCATAA
Primer
(+)agcttgtgaaggtcagtccg
(+)ttatgcttcggggtcaccac


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