Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2211 ]


Position: chr9:63,849,928-63,854,559 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad6(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCCTGTGCTGTGAAGCTTTCcctaacacccacaatctcttcctcttcgatgtagctttgt
ctcaagctgtgtatcgaggcaatgaagagagggtccgctaagacagtgtacgccataaag
gccagccttgaaacccatccacctcctacggtccgagagctggaaccagcatccagaggc
acattggcaccatggagctagagaccctgacccagtgggctccttgcagcaccacaaact
gaggtgctggaggcaagggtcttgcttgcttggagccacccagcagcaaagagcaaagct
aagcttggaacccatcctggcaaactgccttatcccatgatgctccagggcatacccctg
aaggtacccctgtgcccgtcacccccagcaaccagcctgggaaaatggagcgtctgtcag
gagcataaagaagagaaaatgaaaatttaaaaaaaaaaaaaaaagagcccaaggaagggg
cttgccactaacactgtccatgggaggacagcaccggctgttcccccactatcccaagat
gcctctcttatccagggcacccccatgatcaagtatgaggccacccgcccgtagtctcac
tccaagacctaagaaaatcatcttttcagctcgcgcttcctccaggccctgctggccacc
aggtgtgtctgctactggaacactctgagctggctggccctgaacccctgcctcccccgg
ggagacggttccactgggtgaggtgcatgccacaaagctgacaactgagttggatcgcta
ggtcccacatgagtgggaggagaaaagcaactcccatgaagccgtgctgtgacactcaag
ctcacacgcgtgtgcacatatgaacagcccacagtgcacatataaatgcatcacatattc
acgtataaagagacaaacaatggcagacacttccagccatccgttaaaaccccacctggg
taccccctcttctgagactcctggcggcctctcaacaggaggctcccaattgcctcctac
cacagcacctgacgtgggcgcctggaggggaattgatacaggtcttatctccaggctggg
gacctttaacagctgcaccctcacacaggactaaaccttcctggccagagcgtattacta
ttgccccccattccacaagtagaaaaactgaggggcagattggctaagcagctgcctccc
ccaccccaactaatcaggaggcagagcggggacttgaacagagagctaactgtgatgaag
cctctgcctgccacttacctcggctgcaagagtagatgtgtgctggctgaagctgacaga
cccttagggacacagagacacagagagcctgggctgaacaagccctgtgaccccggcagt
caaagagaggcagtgacactgtcacatctgtatgcacttgaagatgtgggcaaagagcac
tcagctgagagccaagggccatgggacagagagcaggtgaacaaacaacacagggctact
tcttgacgactaactccagctactaactagtgcttgctgtgtgcctcacagccagcctca
gtttctctgagcctgtctccaaactgttagcttgaatgtaagcccggataggaaggcctg
ggagggaccctaaggagcttcagattaggcagacactgatccagcttagccccaaccccc
acagcagtactgcctgctcctgaggagggtatgccccagtgacccagctggggctgagag
gctagccaacacagtcaaggccaacagaagggcctagtagtctccactacagcagcttat
atggcatacggacattgctggattaaataaacacctggccaattatctgtgaggctcctg
attagttaccaaatggtaattgtggggtgtacagatgccagccgggtgccccagcatggg
attgggcaggcctatgtgttcagcagcctgccaccttgagttctcatgggataactatag
ttcttccttctctcacccatccagggcactctcttcttctaggttggagtagaggatgct
ggaagaatcttgcccatcccaccagctctcctcaaaccaccagttcccactaccccctca
cgctgcacttccatgactgacagcatagtctgccttccaaaagagtacaacccacagcca
ctcactcccaccagagtgagtttcttcagctgatcatgcttaatcctcaacatgctgatg
tcaaggaagcaggagagaaatgtcagggctgttaagacgccacccaaaaggacaaggggt
ccttagctagccaggggacagtaccccagacccaaatgaaacaagaaaaccataacccca
gaggttcgagaacaccctcaaaagagacctcaaggctagtgattttacccaaatcccact
gaagacactggaagtgaggatctatgggagctggttgatggttcacatcttgtctcccac
ttgagtgaccttggtggagtcacctgtaccctttgaccttcagtttccttcgtggatcac
aggacctgactgagggcccatgctgagagtggatgcctacagggactttggatagccagg
agacaggaccccagtcgtaaatgaagtgacaacaccatagcaccagagttccaagtgcat
cccccaaagagacctcattctgtccaattaaaacaggagcccccattccctgcagatcct
cacgtgtccttatctgcctgggcctgtgcctgatccctaaatcctgccatcctcctatgt
ggccttagtcacaggatgggagaacagagaaacaaaaaagtttggccaggctgtgattgt
catcgtgtgcaggatagtctagatgtgagaatgaccaggtcgtcaagggcaccaatccat
caggacacagaacagagggatagcacagtcactgttcggtgggtccctgtgttctccagg
agagttcctccctggttgcacagagaagcacggtgtcctgtgttcctctcaccccagccc
tggcactgaagttactccacccaagcctccatgggtcgtctgggaaccacagctgatcac
tcagcagcgagagggagtagggcagaccagacagtctgatggggccttacagagactgtt
ccagacgggggacagtgggaagaatggcagactgtctccctagatggccagtcgaggaga
tgaagaacagttggtaatgatcttagagtgggggtcgagagacaccagcatcatcgccag
cacggcaaccaccctattggtccctgaccatccaatgtcttggcctgacccactctgctc
ctggcctttccaattctgaatccctcagtgctctcctgctcaccactcaaccccacagga
tgaggaagtcatgactctcctatccaccaaggcctgtcatccatcccctgggactttccc
ctacctgccaaggactccctttcctgagtcttccctctagccaataccaacacagcccaa
agctcaggggaacacaaaaactgttccaattgcttacgcgggccatctagatcccaactc
actccctcctcccacatgggaaaccccaaactttcttcccttatcttttagcctctcaga
atgccaaccactagacacttttctttttctttttctttttccttttttcccatttgtttt
caaggtatctctgtgtagccttggctgacctggattttactctatagaccaggctggcct
caaattcataaagatctgcctgcctctgactcccaagtgctgagattaaggggtgagcca
ccaccaccaccatcagccagcattctgcctggttcttcaacatagtttttggtgtttgtt
tgtttgtttttgtcatttttttgtgactggtctctctctgtatctccagaaggctggaac
tatagaacaggctggtctgtatcacagatgtttgtctgcctctgtgctcttaaaggccac
cgcacgcaactacctgggcagatctttaagggagggaaaatataccaaataagaggagag
agtaaagtggcctgaggaggggaccagggaccagagagcagacaggagctggagacggga
gatctgtgccacatgagccacaagctcactgtagggtctcaccttcggcctccatctctt
agaacagccatcttcctgtggtctcttcccaggacctcgggaagaccaggaaatgggcag
ggaagggctctagattagggaaatggataagtgtctgggagcagccagtgctgtcacctt
agaatcacaggagcacaagaagtgacaggcagaattctgggaatatagtcaccagggtgc
actgaactgttacagaacaggggagggcagcacagtagttggaaggagctgaggttcctg
tggccacaaagactgcgatgtggccctgagggatgcaaggagtcactacgcttataggtt
gacagcccagctgccttgacgtaatgtaaggtgctggggtggagcctggctcaccctggc
cactcagcctcactcttctgctcttttgtcttgaatgtagagtcagaaaaagatgcagag
gcccagctagctatccccaactccaggccataagccgggctgccacacagtaCACTCTAC
CGACCATGCTCC
Primer
(+)gcctgtgctgtgaagctttc
(+)GGAGCATGGTCGGTAGAGTG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.