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Mouse element [ mm2208 ]


Position: chr9:63,831,988-63,836,712 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad6(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTGGAGAGCAAATGACCCTcactcatcctgggtcaccttgggagttggggggggggggg
agcgcttgagtcttgccaaatcaactcttttcctaatgtctcctgacaaaggcatccaga
ctcttggtcccaaaacaaatcaacaacaaaaagtaaagtctccctaccccagaaccaaga
ctaaagcacttaaaaataaacaacaagaaaataagcaaaacaactactgcttagttacct
ctgggctcagcactcagctcggaccatgaccccgggacaggaaacatagcatgcaaacag
cccagctcagtggtccacccgtgctgtgctcgctccttcccaacccagaccacttccctt
cctgggtgcccactcactcagccatcaactgtggacagggactggacttctggcttggtg
aagccatgaagacatcctctgtggctagggagctcgccacaggctattgatgctctctgt
gcaggcctagccagatgccagggacagaggctgcaaaatggctggctgtctgtctgtcca
cctcctgcaggcaggtggaagccacctgaggacagaggctgggtctgagccctttggtgt
gttcccaggggcctagccggctgcaggcattcacttaaaacctgggagcggactgtttac
ctaacacctcccttcctctgcaggaagtcgctcccagagcatgggtttttagtttttaat
ttttttccccaactctttctgggctcccggggtttggaaatctcaaaggagttgagaatt
atgggatctgggtcctctcctccactgcttccgggagaaaaaggcggatctggatctggc
ctttccaggggggcactttgaccttacatggaacggcctctgacggagcaatccatttct
aggaatttatcctaaggaaattgccagtggtttggatttaagtgcaagtatgctgtgttc
atgactgggggtaaaatgggggaaaaagaggtaaaaagaaaggaaaggaaagtctctcct
agcatgtaaaggcccagggcttggaggattccctgggtaagcatgctgggtccagaagaa
agagtaccaagaggcagtgaaggtcacagggagtacgtgttaaattaaggaaatgtcctc
aatgtggctgaaaggcgccccaactgttacaacatacagaaaataacataccgccccatc
tcgtgtcttaacgtccctttttaactccttgattcactgagaaacaagttgacaagaaaa
aaatattccaaatgattctaacaacaggactacttgctctcagggaacaagagctgaggg
tgggtgggttcccccgggtgagtgggttccccctaggcttttcttactttctaaatggtc
cacgttagtcaggaactacaagaaaagaaagaagatggggtgggggaggaccaaggaatg
gagcattgctaacatgcaaggataactccagcacttaggaggtcggccacgggaacaaag
ttcaaggtcatatccagctacatagtaaatctaaggtcagtctgagctacaagtgacctt
gatttaatatacatatatacatacatatgtacatatatacatatattcataaaggttagg
gaggaaagagatggcttagctgttaaaagctcttctggcccagacagggaactaaggtcg
gatacccagcacccacctgggggtacatgccacatctgtaaatccagttctgggggatca
gatgccctcttctgactgcctggggtcattgtgtgctcaccgtacacacacgtaccctgg
gactcacgtacctactcataaaaataaacagggctagggtgacagttcagtggtcaaaaa
cactttgctagccagaccctggtggcgcacgccttttatcccagcacttgggaggcagag
gcagacagattttttgtgagtttgacggcagcctggtctacagttccaggacagccaggg
ctacacaaagaaaccctgtctattataaggaccagagttcagagccccaggagcaacaga
aaaaaaaatccaaagcagagtgggtatggcaactcacctataaagctgggactcagaaga
cagagacaggagacccctggagactaaccatatcacaagctcatggttcaatagagaccc
tgcctccataaatagtgtagagatcaactgaggaagacctctgatataagctccagactt
ccacacacaagtaactctatctgcatatgtgcacatgcacatgtgcgcgcacacacatat
atatatacactcacatgcacccacatgtgaatatacatgcacacacatacagtaagggaa
atctataggttcgtttgctaactgaacatataacaagggcttcagggacaatgacagaca
attcttataacacaaggtttgtcctatgtcattacgttttatactcacaaagcctctccc
agtacacacccatataagagatgcaaaatcggacttggtgctactagcccagaggcccct
gttcatcacctgagccatgacacctaccggtccaagaagacacagcacaacagacctgtg
tgttgggggaaggggaactactaattctaggaagaaaagtgcccacagtcattctcccca
ctgaaggccaaggggactctcagaactctgggggatccttctggctagagcagctgtccc
tccctccgtctcccctgggcaacatctaccccacaggcatcagtgactcccagaaggact
gggagaaagaaaggactgttattgtgcagatgtggcagctgataccccaggaggaaaagg
tcacacagtcaggggtgagcctgtaccaaggctgaggtcagaagtaaagggaaagctggg
ggcctggcagagaaccctaaaacacagcagataggagagccatgtcaggaggaccccaga
gctgcaaggacaggccaaccctccagcccctcatagggacagggtctgctgatgtgcacg
gaaggccaggtcccactctgggagctgccactcactatagaggggaccagagcactacta
gggctgccttatgtggaggtcactgctcagaagaccaaggacacctgagagggactgtct
tggtcaagagcactgtatatcctaggacaggacacatgattccattgtgcgctgcatgct
aagggtgcatgaggtaagaccttttccttttcactgacaagctgggagctagtgacttgt
ctcacttggtggtggctttcacctttaatccaacactcgggaggcagaggcgggaaaatc
tgagttcgaggccagcccggtggtctagagtgagttctagggcagccagggctacacaga
gaaaccctgtctcgaaaaataaaaaatacaagtaacctgtctctgcacgtcaagattctg
tggccctcacggagtccccgcctgctaggagcaaagtttctagccatgcaggctatgctg
ttccaaggggcattttaaagatgtgataaggtgggattatgaagtctaggctcttgtctc
ttgtgccttttcatggaatatacatatacgtgctttgtgtatatgtatgtatgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtatgggggggggggttcaagatagggtttttct
gtgtagccctggctgtcctggactcactctgtagaccacactggccttgaactcacagag
atctgtctgcctctgcctctgcctcctgaggatgggattagaggtgtggatcatcatacc
tggagacaaagccttattttaaagccagaattatgcaaaagagaaaggggaagagaaaga
gagcccagtgcctagcaggctactccaccattccagcgagatgcaccgaggttctgacat
tccctcctgggggctcagaaaggaggctaaacccccactatgtatcccagttagagttat
cttcctggaagggccacagttcaggactggggctgcagaggctcaaagaatgggctgcct
ggttagatgccttgttctgataaccaggcccgagcagggtagggctcagctgaaaaacag
attttggccagggcaagagcctcatcacatgccatgtatagaggtcccacccagccaggg
ctcctctgtccgcctggaagctggggtgagtctcaggctaagcctctctctctctctctc
cctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtacatgtccatatg
tgtccaagtgtatgagtgtatatgtccatatgtgtccaagtgtgtgtgtgcatgcatgcg
tgtgtgcatgtgtgtgtgtgtatacacgtgacctattcaggctaagcctgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgaacatgtccatatgtgtccaagtgtatgagtgta
cacgcgtgcaagtgtgtgagtgtatgtgtccatatgtgtccaagtttgtgtgcgtgtgcg
tgtgtgtgttttgtggggtgtttagaactttcattttgtttggggctaatgatcaaaccg
agggcctcctgcattccaggcctgtacctctgagctacacccctagcaccaaaactctgt
tttttaaaaaacaggggcaaagttaagcagattaagtcaaaataccccaagaacaatgat
gctatttccagagtcagattctgggAGCTCCCAACATCTTCCTGC
Primer
(+)GCTGGAGAGCAAATGACCCT
(+)GCAGGAAGATGTTGGGAGCT


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