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Mouse element [ mm2205 ]


Position: chr9:63,796,168-63,800,861 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAAACTGAGGCTCAGGATCttgagtgactcgctgaaggtcgcctggctggaggcagagc
ttggcctggagtcccagggcctgaaccagaaggcctgaatatttagcaacagcagaaagt
ggagttcagaagtggagttgcagggaagagataaagggcggagcagcagtctcgggacca
ctatgatgcggctgtgagtcctctgctgctcccaagctatgtaagattctcctggcatca
cactctaaggctgtctaggacaggccccacagtgcgtcctctgacctccacattccctac
ctgaaaagcagagcctgtgcacacatagggtgatgattaccttaaaaataaagcggatgg
ctcctgagaaatcacacctgagactgacctctgacctccacaaatacatgtatgcatacc
tgcctgcacaagtgcacatacacacacatgtgtacacacacacacatgtatgcaggcata
tgcacagtcacacatatatgcatgtatgcatgtacatacatgcacaaatgcacagacacc
atatacatacacatacatatgcatgcatacacccacacagagaaagatttgctacatata
ttttactaaaagtaaaactcaaacacctgacctgccttccttgccttccttgttggtcca
aggccctgcttaggttggtgctggtctcacctgtgctccaggtttggccttcctctgtca
ctgccctgctgtgtggtccctgtgagcacttcaccctctctgattctcagttctgtcatg
ggaatagaactggaagaccctggggaccttcccagcactggcatgacccaacctgcattc
tagagtcccatctccacggacttctaaaaagccagaaggttctgagtccctaagccgggg
gcagggtgagtagccttagtaactatagggagagccagctgggggctgtcaccatcttag
taaacagacccctctggaagctgcatgttctcatagagtttattaaatacacccacaccc
atgctctctgtgaccctttcgttctataaacatcccagatttgtcccctgtgcccaggac
tgggctagccttgagccatgggggaagggagatgcttagagccaatggtcagagcattgg
atggggtaggctggctggagagatgaggacagggcctgaggagcaggcagcagctggtga
tgggggaatgtgagaggcaggtagtgccaggttccctcccccagcaagccactgtaaagg
ctgctcgacatctttagggaagggaatcagccctgaaccacggaggaagcacactctggc
tgctggtgggacctgggcattctgggtagagaatggactggaggaaaaacaggcttgcgt
atccatgagtaggcactggctggggtcaccagaaagtgacagatctggcttcaagttctc
ccacttgctgagtaactaaacccaggctttccttacccccttgggttgacactcatgttc
cctggtaacaccaatgaaccctcaatgtgtgctggctctgactgtcactagcatgaattc
acgtccccctcacagtccccatccccacccctgtactagccaagcccacctttacagatg
aggcaaccaaagcagggacactatgtcacttgctccaaggtcacttagaataaggcagct
acagccagaggcagctggagtgtttaggcccctgtgtaggctggaggagggttggctggg
ggactgagagctttgcagtactagcaactccctagagatgaatgaagtgtgcatatgctg
tgtgacctcaggccactcatactccctctctgaacctcccactgactcacttaggacaca
aaaatattcacaatggccactactccccatacccgcctccagtgtgctcttctcattcct
agtggtctaaccttaactctcacatatatccaaagacagaggcagatgaagagccagaca
tgatgaaggggtgtgctaagcagaaagaaccctctgaaggtattagcccttttcaaaaac
ctagtccatttcagacgtgcccttggggcataggctgcctgagcttctgcttgcagacag
tacctcccacctacctcacttcctagggccagcagagaccaggctcccagtgctcccgag
gacttgggctttgtttacaagtgtctccttggagcatgcgtcaccagatcctgggtggtc
tggggtgggggtggggcaagcaggatgtcactgctgggtactgagctagagggagctgct
gcccaagatggccaacctaacaactcaaccagcttcaggaccctcaccgggaacctgagg
ggcaggagcagaacccagaccctcaggaagaaaggcaggcaaagagcaggtgagatggct
cagctggttgacaatacagttgtcagccttatgacctggaacctgaatggccaaagatga
gtcctgggcctccacacatatgcacatacacaaaacagacagatgtagttcaaaaggaaa
aggcagctatcgggcctccttgatctttaaagccactgaggacttaggcactgtgtgagc
tcagcttcctcagccatgacacggaggtgtcagtgtgccttttgtccccagaggatggag
aacagtgaccgtcatgtccatttcctagcatggggagtaaccaactcctattttctctga
aagcccgaatgtgatgggttggactcagtcccctcctgcagctgggtgcctaccaatgat
ctttaagaaagcccagttcagctgggcgtggtggcacacgcctttaatcccagcactcag
gaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcca
ggacagccaagggctatacagagaaaccgtttcggaaaaaaaaagaaagaaagaaagtcc
agttcagggccaatgagatggttcagtaggtaaaggcccttgctgccaaggccgataact
cagatggctgggatccatatgacagaagcagagaacctcctcctgagagttgacctctga
cctctacatggatgcctcaattgatacactgagaggcacacacaccaaggtaaagaaatg
catcgaaaaaattaagtccggtgctgattacctaatggatctatttagaacccagccacc
ttcccactatccatagagtatcaacctggtactttgtgtcattgtcccagcctccctttc
caggtttgctgtcttagttaccctggctatgagccggcagcctctctccagagtacaagc
ctatgaaaatgccccttccctgcttcctgatctcacccactccaaagtcttggctccacc
tctcactgctatcttggcatttgtagagctgaaaggagtgtccgattttatctcggcacc
ccacagaaatcattcctggattcactaatggcctacactaagcaacatcaggtcagggca
gcacatgagagagagaggctggagtctctaagacagggcctcagctgagagatcctggaa
gaatcatctgtggtcagcctaggggcacgggtgtgatctttgacatggggacaggattac
aagaggtagagacagtcaatgggcaaataacactgggaaacaaagttaagtgatctatga
cacctgttacctgccctgtgccacctgcatcctctggcagccaccacacgtacaagtaga
aagggtttatgtgatcagtaggaagtgtaagaggcctggtgattgtgcaagtcaggagct
tccagctaggtcagtcccaggaacggtgggctctgggaatgccttgtcatgagaattccg
aggggcagaccctttatagaggaatcggccctgtgggtggacatggaacagatctcgtag
cccacagccatagtgggcagtgaggaacagtagtgacttaaagcttgatgcagtgtgtta
agttacagaggtctcagagcccttctgtgagggtatctttcagaaaattgctctcatata
actctggtcctaaagtgtgatggatcactggaccaccagctctatcatgacttagccatt
cctccatctagaatggcaacatgtcccatttttgaatcagaaatatactccctgcctttc
atatacctttaacacagctcgtgtggcagattcttgagtgtggtatgtgcaggtgtatgc
gtttgtatcctattaaggtcctaaaagaagcctcactcctgggtgtgagattggaaagta
ggcctccattctttcttccccagactgtggggagacatggtattttctagtttgctcaga
gctctgagatgggctgcagggaccagagcctccctaatccaactggcatgcacttcctca
cccctcccccatctagtggacacaccccagccatgggcaaggaagaacaaacccttatct
ggttcttatgtataaatatatcccccacccccacatctctcctttgttttgtagcccaga
actctgacatagctgggatagtcttgaccctactggtcctccagtccccgcttcccaacc
agttctgggattacaggcgtatcccaccataccctgtcagctccctttcctgctgactcc
ctctgcttcagactcaataaatactgaaaccaagttcagtttggccccaaaagcCCACTG
AAGCCCTGAAGGTT
Primer
(+)GGAAACTGAGGCTCAGGATC
(+)AACCTTCAGGGCTTCAGTGG


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