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Mouse element [ mm2204 ]


Position: chr9:63,787,523-63,792,204 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACCCAAGGGCCATTGAGATGgcttagtggttaaaggtgcttgccaccaagccagatgacc
taagttcaatccctgggctgcagatggtagaggacagaatggattcccacaatctctgtc
tctccgtctttctctctttctctctttctctctttctctctttctctctttctctctctc
tctctctctctctctctctctcacacacacacacacacacacaagagaattcaggtgcca
tatatctccagcacttcttaggaccgagtagcacgtatgtcccttgtacaacacaggagt
gaccacagcagctgacctggaaggtggacccatggactgagtataaacacataaagcagg
cagctggggactggagacctgacacatagcatcaggacttaagtatcacatcttacattg
ttgaatatattaccagcagatgcaggttagaagatatggtggtttgaataggagtggccc
cacagacttatgtgtttcaatgcttggctgtagggagtggcactatcaggatgtgtggtc
ttattgaaggaagtgtgctactatgaaggtaggctttgtggaacacacacacacacacac
acacacacacacacacacacacacgctcaagctaggtccagtgttaaacaagtttcctcc
ttgatgcctatggatcaagatgcagaactctcagctctgtctctagtaccatgcctgcct
gcacgttgccatgcttcccatcatggtgataatggaccaaatctctgaaactataagcca
gccccaaactaaatgttttcttttgtgagagtttccttggtcattgtgtctcttcatagc
aataaaaccccaactaagacagaagttggtaccagtgactgggatattgttgtgataggc
ctgacacggtttttgtttagagaaatgtagattttgggatgctggattaggaaagcagtg
gaatgctttaagcggggtttaatggacagtcctagtaggaatatggaagacactggtgtt
gtgtgtgatttgaactgtggggtcctggctcaagaggtccagaggagaaaaattttagta
tgttgcctagagatcattcttgtgatattttggtgaagaatgtggctgctttttgccttg
ccctgtttgaggctaaagtgaagagattcagattaattgcattggcaaaggaactctcaa
aacagcctagtagagactctgccctgtagttcactcttctcaagagtgttttgatgaaac
ttagcaagaaaaatagaaaatgtctggttcaaaggtaaaaggggcaccagacctattcaa
accaccacatcccactccctcatttccataggtttgtagccataacatagtacaaaatgc
atttagtccaaccttaaaagtccctatagtctatcacagtctcaacaatgtttaaaaaaa
tctaaagttcaaatctctactgagacttaggcaatctcttaactgtaatcccctagaaaa
taaaaataaaaaaacagaccacatactttgaacatatggcgcagaatatacattaccata
aggaatggcactattagaaagtatggccttgttggaggaagtgtcaccgtgggtgggctt
gaggtctcatatatacgctccagatatgcccagtgctgagccagtctcctcatggctgcc
tgtaggtcaagatgcagaactctcagctccatctccagcaccatgtgtctcttcacaacg
ctaaaaccctaacaagacagaaggtgacttattaagcattgttgtcccccaaagtgagca
ttgcatataactacttgctaaggtactaggctccaactccgttagagccaatatccaggc
acgtgtgctaccactgaggcatgtatggccagcctctgcttttcccaggacatcagggct
tctgatcctttctcaggtgtcacggatgatgctggctcagggatcagctttgagaatctc
tgatccggggaacttccttcccagaaaatcctgaagaccagagctggcagctccggctct
cctcacatcaggaggcaggagccttatcaggcagccggggtggcaacaacatgacattgt
ccaaggcccaaggcccctgtgcaggcctctcccacaggcctgccgcctcctgcctggccc
agcaccctggccctcaggaggtccctccacccagctctgtttgcattcctggagcctgtg
tcagcctggacagcaggcgtgtcgattggggcctggcctagcctggcctggtgaggcctt
gatggctggcgctgcaatccaggcctcctgggccaggcgaaggtggccacacaggactcc
cttagcaggctaatgactcacgcttcctcccagattccaggaaatgctttcctgccacca
ctgccactttcttctcatttaatgaaaaattatctcgtttccatggcaaccaaggatggg
gaagataagggcagggatggccaaatctattccttagaagggttcctgccacagagtgta
cacacacacaccacacactcatacatattcacacacacactcacacacacttacaacaca
cactcatacacattcgtgcacacactcatacatgcacattcacacaggcacattcacata
accacacactccacacacatacacacacacacacaccctcccatcctcataccagcccta
gccttagtccccaacccactatagacctctggttcaggaaggccagtcccagaaatgctt
gcttttattgaaaaggaatggtttcacaaaggcacaactgtaggaaaggttgtaatttgc
ccaaataaaacttaattcgatccatgaaatagctgtggtctattgtgtaatcaatgtgct
atgtgtttcgatttaaaagaagccaatataataggggtaggcaggcacctctgggggtcc
acctctcccctttatacacagtagggccatatagcctgccctgatagtcgaccttgcccc
aggacagagtagtctaagacctctggccagaaccacagaggctcatgggagacacagcct
ggagatatcagtgagaacacttgaagctggtgtgtgggggagggaagaaatgaaaaccat
cccccttttccagagtgagtctgtgctgggtgcctgaggagggggctgggctgagtcgcc
ttcctgtcttctgaggggctgggtagggctgtgggagaaagaagctggccctgtcacctc
ctattcagagaaatccctctggaggctctggaagaatgcagtgataccagagtgacagac
tgtgagtggcctctgcccatttgtgccctggctcagagtgaaggaagtataagctgggag
taggagtggagctcaaagccggaatgcactctgatctggggaggactcttgtaatgatgc
atgcctgcatccctgcctgcatccctgccttcccctgccctggccatctagatgaagaca
ctgagaggttgtcttagttgggcttcattctagaaacaaacaaacaaacaaacagtatct
caaatagaccacatacccaagggtgaccttaacctcccaatcttctgcgtccaccatctg
gctgttaggattgcagatgtgtagcaccatggccagttttatgcagtcctggggaccaaa
tccaggcactctactggctgagccacatcccctgctcactctagaatcttaatgttatta
ccctgacagggaggtttggtaccggtaggatgccaggccagatttatagtcacatctcct
tgggaacagactgacagacaccactgagaaatgaaagtattcttgctccgagcatgccct
gtgtagcctgtgcatctagcagccccaccccatttctcctctctcctctgattacggagt
catggttcagcatggctttctgtgactcagtgtcaccttggacaagccttgagcctcagt
tttctcaacttttcaacatgaggacaattacccccccccaacacacagtcagagaccatc
ctgaagattaaaagagagcacctgagacatagctccagtagagcacttacctcatctgtg
cagggcccaaggttcaattcccagcaccacatgttcagacagaagagtcctcattgagaa
tgcaagccatgaaagagcttctaggtattatcttgaaggtagaacacctcagatttgaac
ttccagtttgccaccaactcactgggtatctggataggaatggatttttgtcttacatgg
ctgaatctcacttttaccatctgtaaaatgggtataatagggatggtgaaacagaagaat
gcaatgacagacacgacgggagcttcataagcagtcactgtttatcaccatctttaccac
caccaccgctgccgccaccaccactgctcttttgaaacatttttgtagggtttggtctca
ggtgttaggacaatttgtgagacttgcctcacacacttgtttgtgctgttctactctccc
aaacaacttgttgttgttgttgttgttttgagacagggtttctctgtgtagccctggctg
tcctggaactcactctgtagaccaggctggcctcaaacccacagagatctgcctgcctct
gcctcccaagtgctgggattaaaggtgtgtattaaggttataTATGCCCATCCCGTGCTT
TT
Primer
(+)ACCCAAgggccattgagatg
(+)AAAAGCACGGGATGGGCATA


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