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Mouse element [ mm2203 ]


Position: chr9:63,733,907-63,738,653 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCAGCTCCCGTGTGAAAGACaggccaaacacggtgcacacctgtaatccccatgctgggc
aggaggaagcaggagaagcccggagccagccagctccagattcagggagagaccctgtct
caaataacagtgtgaagaacgatagaatacactcactgaccccaggcctctacacacatg
tacccatgtgtgtacatgcacattccacatccatagtcacacatgaacacatgcacacat
aacaccacacacacacacacacacacacacacaatttaagagcacattttaagggtagcc
aaaacccccatgattgaggcagagatatgaaaacagaatctggggttagtaaacaacgct
tatgaaatggaaccctcaaataattattcttccagtctcaatcaagaaacccaaataatc
tagcttctcagttcgctccagcagtttctttccctggacccctgctgctgatcagttcgg
gtagcagctaatggagtctggcatgccaaaaccattcgttgtgtgttcttaggggcatcc
ccagcttggaaatcacaaccaggaggtgacagcttccgaagcaccatcagtgcagggacg
gggacatccttccagggagtcaccatcactggaagttcccccaaggatggagagtgtcag
ggtctgaatctgaaatgtcgtccccccccccccccgccccaccacaggttcacgctttga
ataattaattggtcctggtggccaggagatacttggcaggtagagagaggaggataagaa
attctgtgtagtcctctagtcctctgccatatagtgagtttaaggctagcctgagctaca
agaaagtctgagctatacaagatcctttctattaaaaaaaaaaaaaaaaaaaaagtggtc
aggtaaggtcagaaggttatcagtcgcctcagtttgtcccaatagcctgtgctgatgact
tctacccatgtccgtggatgtgcgtgtatgccacagccacagtgtatatagagaggtcaa
agggcaacctcatgcattgtctctcaccttctaccttgcttgaagcagagtttcttgttc
atggctatttgcacaaggcgagctggcccatgagctcccgaggaccctcaggcctccact
ggccatctcattgacgtctcattgatggctgggaatgtagacacatgtgccacttttggg
gttacgtggtttctggggatctgaactcaggtcctcaggcgtcctcagcaggccaagtac
ctgctgagccatcccctagtccatactttgatgaccaggctgggccatttggccacctgg
aaagaaaaagggggtctctaaggtgaaggacagtgagccatcttatcctcagggctgtgt
ggtgactttcatcctgagtcaccagcagggcccttcccatctctgatgagtgacagctgc
gtagtgttctgccctgaacctgctgtgcaatctcaggataggcacttccggcctctgggc
catcctggggcaatcacacagtgctctctgcttaaagggcttagggacccatacgctacc
ctcataatagtcaccatgacattggtcatgaattgtcctgggaggatacgtaggtcctgc
aggggcatccagatgatgcctaccagaggagacactgactatgaaagatgagtagctgcc
aggctctgggttagggtaagaagatggagacttacctatggggacaccaaactctcaagc
cacaggattttaatacagtatttctcgtgtccgtgtacatgtgcgtgtacgtgtgtgtgt
gtgtacatgtgtgggtgcatgtgtgtgtgcaggtatgaatgcatgcgcatgtcagtgtat
ctccgagtagaggccagaagtcactatcaagtgccttcctcagcaactcctgcattttat
ttttcctgctgaccctgggcctgctggccagtgagccccgccatctctccacctcctcag
cactggagtaagagacacatatcaccatacctggcctttcgcctggatgatagggatcta
agctcaggtcttcacacctgagcagcaagcacttcactaagtgcgctgtctccccagagc
tctgatgtagtatgtcttctaaaaaaaaatcaaaatgaatgcccctgaaagctaatacaa
atatcaaaattttagaaccaggtatggtgggtgggacataaccatggccccagaacttaa
atgaaggcaggagaatcaggagtttaaggccatcttggctatagtaaactgaaggccaac
ctaggctatatgagaccctgtctcaaaaacccatgccaaaatctaacaaaagcatctttt
tgttgcgtttatttgtttgtttgtgtgttagtttagtgtgtgacacacacatacacatgc
atgccagagcataagtatggagatcagagaatactttcaagagaccatggggtcccagga
ctcgaactctggtagtcaggcttgctggcagaacctttatcagctgagccatctcaccag
ctcaaaatttatttttaaataagtacaagctggatgctggcaaattttccttttgcctca
gacgctaagacaatactttatttctcagatgggcctcttgctgaccctggacctgctggc
ccagatatcttcctttctctgtctccttggcactgggataagagacacatgtcactgttt
tgttaacaagacggcaaaggcacttgcccctgaacgtgatgacctgagtttgatccctgg
gacccacaaggtggaaggagagaaccgactccctccagttgccctctgacctctacatga
gcactgtggctcatactaaataaataaatgtaacttcatggtaactgggtgttttgtttt
gagacatagtctacaaagtagcctctgctggcctcaaactcactgagatctgcctgcctt
tgcctactgggtgctgggaattaatggtgtgtgccaccatacccagtgtaaagtgtaaag
attttacaaagctagcacaggatatagcaacaacaaaacaaacaagcaaaatctgtgatt
gaaattctctcacttacttgaatcatgggatttgaaaacacttgaagtattgctggcctt
tgttcccctctcagggcctctcagcccttgggagtgacccctgcaggacacaagccaacc
tgctcaggccagacatttgccacatctggggactcgggaggctggctgcacagtggacat
gtgtgattttctagtccttggctgtgaggtgcttggattaaaggccctaggattctttta
atatgaaaacaagctgtagccattaaaaatttagccctgcgaattcgtaactcctctccg
aggtgctgtatttatttaatcatagtacattcgggccaagttctctcctggggctctggg
tacctgtctccatgtccctgaggggcctgagctccagggccaagctgctcatacactccc
ctgtctcccccacccccagccccagctcacagggagataaagcaccttagcttcattatt
cagatggctaattgctaactgatttaattaaagtattcagatatttccccaagttagtta
catttcatatcgctccgttaggagcaattggctggaatgaggagttgaggagagggcggg
agagagggaggctggccaggtgggcggggactggtgtcccctggttggcagaggcttgct
cactatttgaggcagcctgaggattgcctgactttctcctagagagcaactcacccgcac
tcagaaacacactgagatcatgagcgtgtgtgtgtgagcatgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtaagagaaagagagaggagaggttatgtgtatatgaatgatatgtg
taagtgtatatgtatatgtgaaagtatgtatatgattgtgcatcatgtgaatatgtgtgt
gagagtattgtgaatgtatatgtatgtgagtgtgtgtatgtgtgtgtgagaggggaggta
tatatgaatgtatatgtatgtatatgttcatgtgaaaatgtatatgagtgcatgtataag
tatgtgtgtgtgtgtgagaggggtgtatatgactgtatatgggtgttcatatgagtgtat
atttgtgtgtatatatgtatatgaatgtatatgtgtgagtgtgcatagtgtaaaagtgtg
tatatgaatgtatatggtatgtgtatgtgtgtgagtgtgtgaatgaatgtatacttgagt
gtgtctatgagtgtgtgtgtgtctatacacttgagtgtggagcccagaggataatcttga
ttgccactccccagcaccatgagacaggatcttgtactgatgtggacttgccaggtaggc
tagctggctggtcagcttctgtccccaccactggggtcattagcatatgccagcacacct
ggcttttttttaaatgtaggttctggggaatcaaacttcatgcttacaaagggaacactt
caccagctgagcatcccagccccacccccagcctcacagaggttgttctcatcactaacc
cctaatggacctaatggatgggttgaggacctgggactggagcccgttctggtacaaact
gctctgagaccacagcaatccctaaaggacagcctccgtttctgtcaatgggatggaatg
aagcaagtggagaatgcctgactacagccccttgcacagggctgcaaAGGCCGAGGACTA
CTTAGCA
Primer
(+)tcagctcccgtgtgaaagac
(+)TGCTAAGTAGTCCTCGGCCT


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