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Mouse element [ mm2202 ]


Position: chr9:63,719,716-63,725,483 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCACGTTATGAAACTGGCTCtggaatggttttttttttgtttgtttgcttgttttggttt
tttgcctttctcaactgtgggatataccatacaaatatagtcagtcctttatttctgtat
ttccatatccactcatttaatcaggaatagaccaaaaataattatgtatacatgcgcata
agtaaaagtaaaatcaatagttgatacaatattttttttagatacaatatttttaattct
tccaatttgtttcttctggctagatgtggtaccccacgcctgaaatcccagtgcttgaag
gctgaggtagaaagaccatgatcttagaccatgatctaagtcgatttaggccagctagta
tgactccatatcaaaacaacaacagaacattactcttccaaacatcgaaaagctatattc
tctggttcttctcctcggatagttgacctagaaattacaactaactcatgtattctgggt
tagtgagcagctgtcaataaatatctttactttcttcctgaatggtgtttgaagacctaa
aacatttctgatccatttgattcctgatttatgtttggcattttttaattccaaagtctg
tcattccctttaattccacatgtcatgactagtgtagcttaaaggatattttcttagtct
tccatccaggcattgggtgttcttcaagattcctatactttctcctctgcctgagttcag
gccccttccctccatccagcagttggttttgcctctactaatgtacttagagtggcaatt
tattctttagttccatctgaaatatttcattttttaaagatttatttatgtatgtatgta
cactgttgctctcttcagagacaccagaagagggtataggttcccactacagatggttgt
tagccaccatgtggtggctgggaattgaactcaggacctctagaagagcaatcagtgctc
tcaaccactgagccatctctccagccccgaaatatttcatttttacaacagctttgaaaa
atgcctacagagttctagattgacacttgttttttgcccaacatatgcacaaatattcta
gtttctttttaaaaacaaatatttatttttacttctaattatatgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaggcacccttgggagaca
gaagagggtttccgatcccttggagctggattacggtgatcttcagtcgtccacttgttg
ctatgtgagccagcagctaacctaaccatgttttcttctgcatacattgccatctgtttg
ttcccccactctggcaattttgaagatctttgactttagctttgtccagtttcacccttt
taaatccacaaataaattaaatttatttaacttatgtaagactccctagctttatctgca
agctagtttatgtctcttctcaggtctagacatgttagccatcactcactaaatgtttac
ctccactcattttccttctcctggaattcttacttggcgtatgtttggacttctccattc
ctctccaagatccctgactcttccttcatagtccatatctcctcttctctccttgatata
tttattcagctcgtgggttctcccttcagttgtgtctaatctattttacacataaaaagt
gagttttccccaatgatcttttttctttccatttctaaatatgtccttctttttagaatc
tgtttttgttgtcaaaacaaaacaaaacaaaaacaaactaacaacaaaacagaaaacaaa
acaaaacacttttctgtggatgggatttcacgccttaaatcagaacgctcaggaggcaac
cacaggtggctctctgtgagtttgaggcccatgttctccaggaagggtggtctggttccc
tctgtctcatcccttgctgcggtaacctcttggtccattgttctcctcagctccagtctc
tactcttctctgagatcagcttgcctggcctcggattgccagctccagctagatctcttc
tgctgcgtgcatgactctgagccctcagtaccttgagattcccatgaagctaccatgtcc
caagcatcgagacatcccttgcctcttctctggtaccagaggccatagtaaaggatgtat
ctctccctaggactatggggcccttggagcctggctgaagtctgcttctccctggttttg
cagatctcagctttgagcagagtggctgtgagtgtctgcttctcagtccatgtgtaccct
ggtgtcagtcaggcacagaagggtcctgtggacatagcaggcaggagctatcaccataaa
cgatcagaatgaagcatgggagtgtggtgacacagactttccatcccagctgctgaggag
gtggcatctggagagtctcaggttcaaagagcatgagttcaaggtcagcctgggcaaagc
agtgggacgctgttcccaaataaaaagtaaaaagaggtcttaaaatgtgtcttagtgata
aagcgcctaactgggtagcatgcatcagaacttcaatccccatcacagaggggggagggg
gggagggaggaggggagggagggaggggggcagggaaggagggagggagggaggggggca
gggaaggagggagggagggaggaagatcacataaggtaaagataattttcaaactagaaa
ttgtaataataaattcaaaagttaaaaatagttgtgagccaggcgtggtggtgcacgcct
ttaatcccagcactggggaggcagaggcaggtggatttctgagttcgaggccagcctggt
ctacagagtgagttccaggacagccagggatacacagagaaaccctgtctcgaaaaaaaa
caaaaacaaaaaaattaaaattaaaaaaaatagttatgaaaaataaaatcaactgaacct
gaacaatgctagaactacattgattcttcaagacatcccttgtctcttctctggtatcag
aggccatagaaaaagatgtcttaaagctaaattgatgacattaatatgtgagagtattca
ttttaaagcaactcaaagaattatttcccgttaaaattttaagatggccaggaacatgcc
tgtatcccagcacgtgagaggcagaggcaggcagagctctgtgagtccaagttctacctc
acaggttctagaccagccagagttacatggtgagaccctgcctcaaaaaaaaaaaaaaaa
aaaaaaaaagaaagaaaagaaaagaaaagaaaaaagaaaaaaagaaattaagaagtctga
ttaaagtggtctaaacaggaactgaggtaaggagttgtgaagtggatgataaaacctaca
agctggcgctggggagatggctcagggggcaggcacactccctcttgttgcagaggaccc
gggttcatgcctagcatccacgctgggcagctcccaaccaccataactccagctccagga
gctctgatgccctcttctggcttccacaggcaactgcactcgcggagcatatacatccaa
atacacagaattttaaaactaagataaatattttttaaaaaacaacaaacaatgctcaca
tggggagtcaaaaggggtgcaggtgaccctctgctgaactctcagtccccacttgcacac
actgatgcatgcacacagatatacaaatataaataaaataacatgaacagcagaaagcaa
ggtgtgtcacaggtctttttatgtcaatactaaccttaggctagggcacaccaggcacta
gtggcttttcatccttacactagctgtgtgaggtaaattctatcattgtccccattttac
agctttggagactgaggtcatgggggacttgagacttagagtgggtcttacacacttgcc
tcttctctggggcctcttctcacttggggcacacagtggctttgacattgcgcattggtg
caatcttctttgtggacccagacccgtgcgctcacgtcagactttttttccctaacccct
ctgcttcaggacacagcgtttctcctgctcccatgtcccattggcttcttagttttaagt
cccgtgcctctggggcccagagatgccttaagagagtcttgggaagcctgatatgaagat
ggggtctcctgaggactgtgaccccatgagcctgtggcaccgccctatttggagaaccag
gtgccaacgtcatcgggactgtgaaaagggccatccccctgcagctccaccttggggggc
tacccctagcccagaagctgaaccatacacacagcacacagcatagcacaggccctgcgg
gtgtaccgggtgcggaagtcacttgagcgacttgcccaggcagcctccccgctcaatgtc
agccgcaggctcttagtacatccatcatctagtccttaagacatattaaaatggatttaa
aaaggcatttcacattttctctccttaacatccacattattaccacgcatcggcttttgt
tttaattaaaatcggttttgaaatcctccatgaaacttcagtgggattgttaaaggcggc
aatttccttatcggcaccgagtccccacaacatactgtaatagttattttgcaacaaagc
gcaagtcttattaatttagctcaatcaaatcagcaccgcgttaatttacggggctgtaaa
aatctgccagtgctgctctagatcagagaacttaggggcaggcgggacaccaagtgcgat
gtttattttgtacaatggtccctaactgcatctgcgtgatttaagagctttccgagctcg
gataatatcacatgcatacagcattgtgtgtctacgcctcattactccctacagagaccc
aaaatcatttggcattcaactcctgcctaaaatatttccttctacatacaaatatttttc
ctgctttaaatgacttccctatgttaatttttcccccctttttggcttggcactgtgaaa
caaggtactttcccgtgtgggcttctattttggtcccgtactgaatcttactggtagttg
ctgagccagtggtgggctctccccgcccccgcccccgcccccacgcctcttcttttcctc
caaaccgggagctcatgaagcttccgtgaatggttgctggatttttctgcttcctggttt
tcttttaccagtgtcttcttcaggagctacgagcatttacttctctggttctcctcgcag
taacaaagctgcagaagagggtgctgtgctgagtcctgggtgcagggtgcagggttcagg
gtgccgggtgaaggctgagtcccgggtgcaggcatggagtgcaaggatgatgtgggttgg
aaagccgtgactggtgggaatgaagaggtggagcatcagagagaatgtgtgacttgcctg
aggtcacactgaggcagaaacagcagtgggtgcagatgacctcgcctctgatccaatctg
tttgttttgaggcagggtctgaagcagacaagttaatctgtagttgaggatacctttgaa
cttctgatcctcctgcctctacctccaaaggctgggatggccggtgctcgcccctatgcc
cagtttatgtagtactggagattagactcagggctttatgcgtgttaggcaagcactcta
ccggctcaacccggatcttctgagcccttcagatggtggaagactgtttgattagttgtg
gtggataccagagcttgctggggcagagcccttgcttttcagtgtcagCTATGGTGGGTG
TGACAGTC
Primer
(+)CCACGTTATGAAACTGGCTC
(+)GACTGTCACACCCACCATAG


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