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Mouse element [ mm2201 ]


Position: chr9:63,716,154-63,721,003 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCAAACCTGCCAAGTTCTGCttgccgtgactggaacctggcctcatccttggattacatt
tgcaaaagcttctagttgtcggtggttgactctggtacttcaaattttcctttaattcct
tttcacaagttggaagcttagctgggtgaggtcttgtcctgaggtcactgctccatttat
ttcatgtagcatcaggcttttctttaaactgttttatctccttgagcactggcgttagct
ccattacacatccttctactccttttcttctcaaacagtacattttgcatttttccttgc
tcagcttgctcttttttattgtagatctacataggacccatcactaatagtcatagaaca
tagtcaatactaggctgacttgaaacctcctccaccaatgccattaacccaaaactcttc
aatttagcctcatgcagatttttataataaaggcaaaaggtagccatattctttgccaaa
atatcactagaatgttctccaggccacttactaacattcttccctctgaaacttattgtg
ttgtccccccacagttcaaattacccacagcaccattgtctatgcgttaatctcatctgc
tgagaccaagaccactaccactatttttgaagcaagttttattaaaatactcgccaggac
aatggacagtggccaggtcaatacccaagactctcagagtatggtgctgacttacattag
tcagggtcttataaaggcaaaactcacaaggctacgtacttcctgccttcatccaatgag
gtgtaagcatgcatcctgttgaacttcctgcctatatattgctcacttacatgtaatcaa
ggaaattgtgtgcagttggggtaaccatgcttgctttcagaagtaaaaacatgtagcttg
ttgtcttgcatgaacaacagccctcagcattccaggaagttttctgtccttgagcaagtg
gggcctataggttagaggtattcacagatatcttaagcatagtgatttaaacttaagaca
taactttagctattacatatgctcctactgggatgacccagaaagccccactgaaagtgt
ccaactacctttctagtccaaagtccacattcttctaacaagaaacctggtcaggtctat
cacagcaacaccccactcctggtatcaacttctgtcttagtcactagtttattgcagtga
agagacaccatggccaaggcagcactcataagagaaagaatttaattagagacttgctta
cagtatcagaaggttagtccgttattgttatgacagggaccatggagccatgcaggcaga
catggctctggagtggagagtttacttcctgattcactagcagaagagagaaactaccat
actgtctctatagccctcttaaatacattttatttatttcttgacattttcatacatcta
atcaatgtgtcttgatctatctgtctccaacttctactccccaccctaacacagccccat
aaccctcttgtcctttcagtttttaactgataagccagtacatccaatcactactgctgc
tggagtgttgactgatctcgtggatttgattttgtgctgcagtgagctcataggtgcaat
ggacatgccatgtctcgaaaagagcatttcatagcactcctccaatcttctggctctatg
atctttctgcccctcttcctcaatgttccctgagtcttggggtggggacatagatgtctc
atttagggctgacacccaatagacaaatatttcttgttgaccaattataatgtacattaa
ctgctgaccactgcagaggaaagccttcttcttgagcaatttcaaacatgagggctgcag
ggaccaggcatccaagatatcactgtaagactctgatgagccttagctaccagggaaccc
ctgagtgagcaacacagagccaaggatcgatgcaaaagcaaaaggaatttattgttccag
tgcactggggtcgtcctgcacccgaaggagaggcagcaaccctgagtggtccattcagtg
agtttttatacagtttccaggggcagaatagagcatcagcaattaggcacaatgtgactg
gcagaacagtgtgttttttaaactgattgttctctgtgggtggccaacggtcaatccccc
ctcccttctggaggggaggggtgcctacgtgctctatgatctttctcttccaggggaggg
gtgcctggtggaattttccaaaggtcctgagctgacctcttccttactgctttggtcact
gctaagcacccacctcaggcttccatggagattctatatatgtggtggcttgaaagaaaa
tggcccccgtgggcccagagggaatagcactattaggagctattagcttgttggagaagg
tgtggcctttttggaaaaagtaggtcactgtggatgtgagctttgaggtctcatatgctc
aagctatgcccagtgtggctcacagttgttggagaactctgggtttgttggtttgttttt
gttgttgttttttgggttttttgtttgtttgtttatttgtttgttttcgagacagggttt
ctctgtgtagccctggctgtcctggaactcactttgtagaccaggctggcctcaaactca
gaaatccgcctgtgagaactctgttattaaggtctcagtccaccatgtctagacagctct
ccaagctcagggcaaaatggaggactccctttctcagtggggctttgttccctttttcta
cctgaccttgtgactctgagcagagacgcctgaccctctatggaggatgaccctgtgcag
agcttgcatttgctgcaaggctcaacacataagtcctgccctttcctcctgaccatatga
taattaggcactgtgttctgaccaatcagcccttctcacccttgaccctaagagccctta
tataccccacccccagaacaacaaaatgagctgtctctctgaagctgagtccccgaagtc
cttgatgtcatgctcaactcttctgctccctccacactcatgggccagtggccaatgacc
cccacagtctcctgctgcctgcagatcgagatgtaaaactgtcagctccttctccagcac
cttgtctgcctccatgctgctgtgtttcctgccatgatgattgacagtgaactaaatctc
tgaaactgtaagccagccccaaataaatgctttcctttatgagagttgccatggtcatgg
tgtctcttcacagcaatacaaccctaagatagtaagtaaagggggaaatggaactggcct
ctactgtgtgtggagatcctttatccggggcagtatccacagcctgtgtgctacaaaagt
ggctttgcccagatcaagagacccaaaagaaaaagacagagggagacaccatgcctttta
cagcccagtctccaaggtcagccatctccacttttattgtattctgttcatgagcaacaa
gtcactggagcagatccccctcgggcagcagtcaggctttactcaatgaaggaaggtgta
tcaaatcaaagacctgaagactccacgttatgaaactggctctggaatggtttttttttt
gtttgtttgcttgttttggttttttgcctttctcaactgtgggatataccatacaaatat
agtcagtcctttatttctgtatttccatatccactcatttaatcaggaatagaccaaaaa
taattatgtatacatgcgcataagtaaaagtaaaatcaatagttgatacaatattttttt
tagatacaatatttttaattcttccaatttgtttcttctggctagatgtggtaccccacg
cctgaaatcccagtgcttgaaggctgaggtagaaagaccatgatcttagaccatgatcta
agtcgatttaggccagctagtatgactccatatcaaaacaacaacagaacattactcttc
caaacatcgaaaagctatattctctggttcttctcctcggatagttgacctagaaattac
aactaactcatgtattctgggttagtgagcagctgtcaataaatatctttactttcttcc
tgaatggtgtttgaagacctaaaacatttctgatccatttgattcctgatttatgtttgg
cattttttaattccaaagtctgtcattccctttaattccacatgtcatgactagtgtagc
ttaaaggatattttcttagtcttccatccaggcattgggtgttcttcaagattcctatac
tttctcctctgcctgagttcaggccccttccctccatccagcagttggttttgcctctac
taatgtacttagagtggcaatttattctttagttccatctgaaatatttcattttttaaa
gatttatttatgtatgtatgtacactgttgctctcttcagagacaccagaagagggtata
ggttcccactacagatggttgttagccaccatgtggtggctgggaattgaactcaggacc
tctagaagagcaatcagtgctctcaaccactgagccatctctccagccccgaaatatttc
atttttacaacagctttgaaaaatgcctacagagttctagattgacacttgttttttgcc
caacatatgcacaaatattctagtttctttttaaaaacaaatatttatttttacttctaa
ttatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgcaggcacccttgggagacagaagagggtttccgatcccttggagctggattacggtg
atcttcagtcgtccacttgttgctatgtgaGCCAGCAGCTAACCTAACCA
Primer
(+)ccaaacctgccaagttctgc
(+)TGGTTAGGTTAGCTGCTGGC


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