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Mouse element [ mm2200 ]


Position: chr9:63,676,294-63,680,617 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AATTTTTCTGGGAGGGCCCGgctcaccctgtgtagacagatagatatcaaaagcaggact
gatacccaggcttgtttggcccgctctagtttcatttctgttgctgtgataaaacactgc
tgacagaaatctacctagagaagaaacggcttgttttagctcacaattctaggttatgtt
ccaacactgtggggaagtcaaggcaagaagtcgaaacagctattcacatcaaccatcaca
cacagagagagaatgaatgtatagcctaagatcctaacatagggaatagcgcctcccaca
gtgggcagctgccccacatcaaaatgcaatcaaggcaatcccctatgataggcttatagg
ccaaccacacctagacaatccttcattgagaatctcttcccaggttattatagactatat
aatagtcaagttgtcagctaaaattaaccataccaggctccaaatcctggtctcttaacc
agactagagccactaaactactttcccaagcccacgctgcttgaacaaagagatccaggt
tttcgtggctttaaaatctatgtcctccaaactaccagagaaaaaccactcttcaccact
actgccatttctcaatggtgtcacaaacattgcccattttagaggtaatgtgctgctgtg
ggaagtggctacagctgcctaactggttcttaccaggtttttttgctcacactttcacca
ttttggattccttctgtgaattccttgagaactaaggcttcaaaatcagggaaacctgaa
gttgcaaggctgagacccctaggatgtcactggtgggtcattagaagtggtggggagggc
agcctctccattcctgtctcttgatattgagaccctatggctcctggctatgaaagaaac
cacagccaggcatggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcg
gatttctgagtttgaggccagcctggtctacagagtgagttccaggccagccagggctac
acagagaaaccctgtctcgaaaaactaaaaaaaaaaaaaaaaaagaaagaaaccacattg
tctattgggatttgaggccatgttgcatcccccaaacatggcccaggcatcatgtggctg
ttcctgtaaccgggtcttctcaccaccactcctctgtgatattttggaaggaaatgtggg
gatttggtgtaaaataatagattagaagctgcctccctctgactcagaaaagagtgcatg
ttgggataaaaaaaaaaaaccagacctcatttcaaataaataaataaatgcaacagaatt
taaggtgatggggcaaaggggatattgggatgactaacaaggatctaacacccatttttg
gcctctgtagacatctgtgcacacatgggaaaccagagatgactgcagactcataattga
gaaataagagacattgaaggtttctgggacagtctctctcaaaaacaaaaaaaaaaaaaa
aaaaaacagcccagacagggagctattggagagagttattaaaaactgtgggaagatatg
gaagtgtacttcttcatagttgatggcttctggcatcagggagggggaggactcagttgt
ctttaagaggctggccactgggagtttgaccatgctccaaggactatatgcacaacacaa
attggacttggtgtgttctttttgttgggggaagagcgcaagggtggaagggtggacttg
gggggagcaggaaataagtgtaatgagatgcattgtataaaattctcaaataatagccgg
gtgtggtggctcacacctttaatcccagcactcgggaggcagaggcaggcagatttctga
gtttgaggccagcctggtctacagagtgagttccaggacagccagggctatacagggaaa
ccctgtctcagaaaaaaaaaaaatcccaaataatcaagagagatattatgttgggggtaa
ataataaagagaaataacagaaaatatatgcacacacacacacataatataaatcttttc
ttgaaaggagagtagctagaacagttccgagcacatattgcttttgtagaggatgagtga
tggattctcggcacccatatccagtgactcacaccacctataaatccagttccagggcac
acgacaccctcttctggcatcagtgggccactgatcacatgtgaacacacacacacacac
acacaaagtaataaatctttctaaacattagaacagaagcatccaggcatggaagtacac
gctttaatccccgtgctcagagccagcaaccacctaccccggtaacatctagtttccacc
atcaaagtacctggcctaagacttccttccttctgtgcctctcccccttggcagagacct
agtacaagggaaggcccatacttcagataacatagctatcaatcaggaaagtatttggca
ctgaggtgtcgggggaaatgacagccaagccaatgtcacagaaagagtgaattcacccaa
gaagagagaaaaaaaaatcccaagagatgaaaaccagaaaagttcagtcaaaacctgtga
ttgcggcttccctgttggctaacgaccactgaagcccacatgtgaacatatggctaccct
ggctcccactataaccttccaagaaggtccgtgctaccatcagcatgttcatctgacaga
ctgaggaaactgaggacagtgggccagagcacttagctggtacgtgataaggagggggcc
tggactttgagtgctggctgcagggtgttctctccacaacacgttcatttgaggaggcac
aaaactcaggggctggcaagatagcctatgggtgaagacacttgctgccaagcctgaaga
cctgagttcaatccctgggacccacataggagaaacatgagaaaaagctccccaggccag
actgacagaggcatctcccaagtgaggctcctgattctcagatgactccagcttgtgttg
agctgacaaacaataacaaacaaaacaaacaccgtctacccacaagctggagtcctgtga
gaagccggaacctcacctgagagatgccgccattggtctgacctgtggagctttttcttg
attaaggattgatgtgggaaggcccaggccactgtgggtggtgcccccccccccactggg
ccatcctgggtggtataaaaaagcaggctgagagagcaccaggaacaagccagtaaacag
tgttccttcaaggcttctgcttcagtgcccggcccagggttcctgcttaaattcctgccc
ccaacttccctcaatgatggacgtgagctgtaggatgaaataaacccttttctccccagg
ctgctcctggtcatgggagagagagagagagagagagagagagagattacatttttaaaa
aaaaaaaacatgcagaagggctcagcagttgacagcacttgttgctcttgaggtttgatt
cctggcacctacatggtggctgacaactccctatacctacagttctaggggatccaatgc
cgtcgactggcctccaagggcaacgggaagatacacagtgcacagacaaacatgcaggca
aaacacccatacacataaagtaaacataaatattttgtacaagactttaaaagtattgca
tagccaggcaatggtggcacacatctttaatcccagcactcgggaggcagaggcaggcag
atttctgagttcaaggccagtctggtctacagagtaagttacaggacagccagggctata
cagagaaaccctgttttgaaaaagaagaaaaaaaaaaaagtattgcgtagactccaccct
gagggaggggagcaaagcccctcctttccgagcttggtttgcccaggctgacttccttcc
agagagcagagatggaaaggtaaaaccagccagtgggaatcaagaagcccacaaagccct
gccagcaacagctgtgatgatctagagacagcaagaagccttcaagtaaggaacatggca
tttgcctctgggaccgtcacactctaagaggtgaggctgtgccgatagagtccttgcctc
ccatgcgtgaggtcctgggttccatgcccagcaccacatccactgggcgttgtggcacat
acctgcagtcccagcacttggtgggtagagaagttcaaaggcatctccggccactgcaca
gtgagtttgaagctagcctgggctacatgagatgctctctatccttagagaagggcgccc
tccacccccacaaccagcgcagtgcagggcatcaggaaggaagaCGGTTGTGAAGTGTCA
AAGC
Primer
(+)AATTTTTCTGGGAGGGCCCG
(+)GCTTTGACACTTCACAACCG


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