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Mouse element [ mm2199 ]


Position: chr9:63,671,711-63,676,384 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATTGAGCACACGAGCCAAGAccaggtggaaagagcaatctgcgctttatgaattggcctt
tatggcttcttccccacccccaggtctgagtttcctcatctgtaaaacagtgttggttca
ccaatactggatgtcaacctgggcttgtgcctccgctaacagtctggggtggatctaata
ggtgcaagtatgggctcatctttctccacacacatctccacctagagactggctaagagc
agttacaccaccttccctctgatatgagcatctgtctatgtagcctaggctgctctcaaa
ctcacaaccctcctgcctcagcttccccatacccagcctaaccatgtgatctttaaaaca
gcttctatccccatgctaggtagggctcaccatctctgctacacagaaagagaaagagtg
tgagctggtctttggggccaggggtgggaatggtgcgtatctattgcttttcactaatga
gaactcagcggaaaggctggaacctactataaagactcggtccagtctctgccacgcttc
ctccagcccacaggggcacttggaccctgggctgagagcctcactcccacgccagctcag
tccctagaaccagcaagaattcctgaaaggcctggggcagggatgcaggtgctctgtgac
tttagaagcaccatttcccccctcaggaggattaagtgggaagataaggaagagccagcc
aggtaaaacaagatgctctcacccatcactgtcactagctgtgtcgatgaggacattggt
ggtgataggcttgctaatcagctttgctgacacaagggcatgcctctgttttatggccct
gacataatttcccaagaaatggttgtgtgtatgtgtgtgcatgcacacacctgtgtgcct
acctcccgtgtctctcctagatctgtgttccctgtaagcttcctgagggcagagaccact
ccgcttaaagccaccctctcgtgctcaggtcttcttcagaaaattctccaactcagtcaa
caggaaaacctaagaatgaaggcaaggcctgaagatagtttacagttgtgcccagtctgc
ctgccccgtcttcacaccgtgttcctgtctctcatctcctcggtttgcccaggcaggctt
ccatggggcttggctccttcactccagagagagaatttccccacattttgtttgttatta
gtactagttccacggctatgaatagcttccatttacagtctcaatatggatcgtcctgga
gcacagggccaaagtggccccagggtctagctcaggtctgcttctgtgtgtgcttccagt
atgcacttgggagagatgaatagggccatttagtaccaggcactgggtcagactctccaa
ataccttgcctttaattttcaaaaccacccaacaagagggtactatagacattatattat
aggtgaagaaaccaaccttagcgaggataagtagcttgccctgtgtcacagttagaatgt
ggctgagcctggaccccggggtggcaataaaacaggcttggtcttggggttctctgcctc
tttgatggctctctgtcacctctatatacacttcttccatgagctcaggggacatgtctg
cacatctgtgatgacacacactgatgaaccagttcagacagccttgggtctcaaagagct
tagggtttggggatcataatggacctggagagcaagcacacagctatgtgtgtgtgtatc
tgaacatatgggaggagggaataagtgagaggagcgagaagatggctcagtcggccaagc
acttgccgtgcagacatgaagagtcaagttcagattctgatcaccctcgtgaaaagagcg
tggtgctgtgtgcctgtcatccagtgctggggaggtggagacaggagcttgctgaaactg
gaaagggacagggaaaacagagtgttagtctctcacccccacatgtgtgtgcacttgtgg
gcatgcacttgtacatacacacacacacacacacacacacacacacacacaaaacaggta
aacagcaatatcacatacacacacacagtaggggaagtgcttagacctgtgggtagagag
taaaaacgcctcagctcccatagtattgaagagtgttcctcccagagggaacaagattgg
ggcagattggaggcaaggaaggggaggtacctaggcagacagaggaaggtctatgtcctg
gagatacagcgaactgtgtgtgaagacaacccacaagcaggagacagatggcaaggcctc
tgggtgcagagcctggtggcactctgaggtgctgtgggcaggggacacactgcagagcag
gggggggggcagaggtaatgtattacctgacaaagagaggcaggcgaatccacagaggtg
agagatggagtcctgggcagggagggggatgggcagttgtcaggcaagatccagtcagta
agaacacaaattttctaagaagctctggttggagaggctcaagtctgacccctatgtaat
taaagcatctcgtcttgatttagaatgttcatggcataaggacagtcaattgactctagt
tctgcccacacagaagtactccttactgaggtaaagtctgacactgaagcggcatgccat
gttgtcctacaggagccaaacccagaagtcactggctaaacattgtaagatagtccttaa
ggtagcaagatctgggaaggttgtcatgactcaaatgaggcatgaggaagatgaagggtc
accccttccctacagggtcaccctttccctacagggtcacccccccccttccctggcctt
ttcccaaaaccttgatcagcagggtcaccacacatattatgtttacaggagaacccaccc
ccaccaacgtctgcatccagtcttggtttagcaagctgctaggtgacattgcctccctgg
ggcttgcatccttgagttccaataacaacagtttttcagttaatgcctgaagccaccttg
tgctcaactcctgcctccactttctcccagccccaggcctgggtgagatagcttttccct
gccaggctggccccagcctcctgctgtgcagtgcttgctcacgtggttatatgagcctta
agtgtcacagaggctgcccgacaccactcagaggtatccatgctgaaaagcaagtcccgc
atcccctgctgaaggagccaagccctctgagcaaacctgggcaacacatttccttccctc
tctttttaaaaaatagtcactctctgtggggcaggttgcttcttgcactggctgaactag
cccgttccaaagcccggtgtctatgagtcctttgtaacccttgagccagagggaagatgg
aaaaaaggtttctatttatccggatgtttgacatcccgagagggaatattatcatttctc
cagtcaaataccaaggctccactgaaaaatattttcgatctacaggaccaaagtccggca
tctttgtgaacctcagccaacacacacaggtccatggggctgggtcagggcctgttcctc
cccagcagacacattcttgtcagatcccctgacgatggcatgtctagtccagagcatgga
aggactgactgtgattttcttccacgttaggccagggaactcttcctctgccatgacagg
caggaagcctggagctgaggaggcatagtcatgccaaagagaagctatgacccggaagtc
atagaaatggtgtggccaaacctgcctcctcccaagatgcaagagacctggaactggcag
gcagggctcatgtggctctcaagacatttggctggggctggagagatggctcagtggtta
agagcactggcttcttgctcttccagaggtcctgagttgaattcccagcaaccacatggt
ggctcacaaccatctgtaatgggatctgatgcccttttctggtgtgtctgaagacagcta
cagtgtactcctataaatgaaataaataaatctttaaaaactaaaaagacacgggctgag
gagggaatattgctttatgttataaatcccatacatattcattaaaataaaatttaaaac
atggagaagaaagttcccatctccaagaataactctgatcattgtacttcatattaccca
ggcatcagttctaaatatgatatacatatataacaaacacctgtgatcccagtattcagg
aggctgaagcaacaggctcacaagttcaaggccagctggggctatatagtgagatcctgt
ctcaagaaaacaatgaaccatgaaagtgacttcgatgtccatattcagtggctagctcct
tccctgattccatgtcatgactttgcaactcattaaatagtcatccacaatacctgtcag
agccacatagcattttatccaactgcggaatataacattttttaaagactatcctcagtt
catggctaatttaggtggcattttcattctatttttattattagtttttattttaatgaa
catctgtgatgatattaattttttagaaaccctataattgctcagaaagagtgataataa
aagttatcgtattttcagtccacaatttttctgggagggcccggctcaccctgtgtagac
agatagatatcaaaagcaggactgatacccaggcTTGTTTGGCCCGCTCTAGTT
Primer
(+)ATTGAGCACACGAGCCAAGA
(+)aactaGAGCGGGCCAAACAA


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