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Mouse element [ mm2198 ]


Position: chr9:63,613,854-63,618,370 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTTGCCCATGGTGTCTGTTCacaacagtaaaacccctaactaagacagatacctatggat
cttggcacaagatctgcacaaagtcaggctaacaccactggtctggtcagtattccagca
ggtgggacttattggactctgggctacaaaaacaaaggagaggactctaaggtgggaaag
gggcgtgctcaggctgtacctaggggactgggggggggggtggaatagagatgatcaaaa
tacattgtgtgtaaatatgacaaagaataaataaaggttatgcagaatttaacactggct
tctgtggttgtttaactctgaatacactgagcacacctcaattgcctgttttaaaatagg
tgacatgtaggactctgcagttaggaatgtgagttctgattttccagaggacccaagctt
ggttcccagctcctgtgtcaagcagctcacgattacctataacgctctccctctgctctc
ctcacatacataagcatagacatagacacacatgcacacagtttacaataaagtgaggtc
tgggaaaggacccatcaggtaagagaacttgttcttgcagaggacctatgttcaagccct
agcatctacatacatggtgagtcacaaccatccagaaggccagttctaggagacctgatt
ccttcttctgagctcagagggtaccaggcacagatgtggtacacatggacacatgtgcac
agaccactcatacatacacactaaataaataaatctaaaagaaaatctatttttaaaaaa
atttaagaaaaataagtacttaggagacagaggcaataagtacttaggagacagaggcag
gcagatgttaaagttcaaggccagcctggtctgcaaagcaagttccaggaagacagggct
acaaagaaaccttgtctcaaaactcccactaaggaaacaaaacaaaaagacaagacaaaa
acaaacaacgaaaaagcaataaataaactaaattgttacaacgctgggagtctggtagga
ccggattgtatctcactatgagtttctgtttaagtagcgcaggctgggcccatactgaga
gtggccaagcactaggccctgcttcaactggatgggtggctctgttgagttctcataact
acccatggcccatgccatgatcaatccttctcagaagagggcagagaggccaacagcagg
gcgtctgtgagtggccatactctggccacccaggcagtctgctgggcagccctcatcctt
gaccacagtccaaacaatggtcagcacacaggaaagagtcacactgcagccacttgcctt
cttgttaaacactgtgaatgtctccatatgctcataaatattagcatctgacagtgcccc
gagtgtagatcatgttgtcatgtgtgtctactagcatactgtcatgtatgtctactagca
tgctgtcatgtgtgtctactagcatgttgtcatgtgtctcaaccgtgatttatcaaactc
acttcctgtgatggcttccacttttttgttttgtttgtttttgagagagggtttctctat
gtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatc
tgcctgcctctgcctcccaagtgcttggattagaggtatgcaccaccactgcccagctat
ggcttccactttcatttcatgtcacaaaagtgatcctctaacatgtctgtgtatgtacat
tagttcatattctttattatttactttgagtaagacctaggagaattacagctttttatg
acattgccacatggccttccaaaaagttatggaatcagcccattcctgccacacagcttc
tgagagagttgacacctgggacagagtccgtgaagactaggaagcctcagtgttggccgg
ttttttattgtaaagatttatttatttatttatttatttatttatatgtaagtacactgt
agctgtcttcagacacaccagaagagggcaccagatcccattacagatggttgtgagcca
ccatgtggttgctgagaactgaactcaggacctctggaagagcagtcagtgctcttaacc
acggagccatctctctagcccctgttgattttgttgtttctgctgttgctgctgctgttt
tgtttggtgttgttttgctctaaaaccaacaaatgagaacaaggatcttttccaaagact
tcccagcatagagccaaaagctacctgcctctcagtgagggaaccacagtacatcagcct
taacagaaacacctataggtactggcattcccagagctaaatcctctccccccaggagag
actttataaaccttgagtctcaggatgatatttttaactttgtttggtttgtgtatgcac
atacacatgtatgtaggcatatacccaggtttgtatacaggtagaggtcagagatggcct
ttatgaattcccacatttgctgttgagacaacatctctcactaaacctggagttcaccaa
ttaagcgaggctgcctgtctgagaagcccaaggatcctcctggctctgcctcctcctcag
tgctaggactgcaggtgctagccaccatgcctggctttttacatagatgtcgggatccag
acttaggcaaacacttgaccaaactgagccacctccccagcccctcagggtaatccttag
aaaccaaaacccacatatatgaatatgcagccttaaatcttaccagagtgctacctcttc
taacccttctgactgggtgatgccagtcacctcagcatcactgctagcaactgaccccag
gcttctccgggagggtctttttgtctagcatcccccagggctacagccagggactgctgt
ctatggtcagtggagtcagcagccctgaggcttctccctcccctgaagctcacctttctc
taagccccaaaccgtgatctttccgacactctgtagcgctcttcaccaatttgtaacatt
ttatcctaattgtctccattctctgccggctgtgtgggtgagcattctcaggcacagatc
taatcttcatctcctttgctcattggaaaattgctttcagtgacatcactgtttctggct
ctactgtccaatagaaatataatgagtaatgtgatttgaaatttgggactatgttaggaa
taaaaggggaacatgtgctattacttgtttttttttaagttttattttaattatgtgtat
gcttgtgtatctgcaggagttgtgtgtatatgagtggagtgcagttatccatggaagcca
gaagagggcataagatcttgtaagtgattatgaactactcagtgtgagttctaggagcca
aactccagtcttctggaagaacagtgtgtgctcttaaccactgagccatcatctctctag
ccctgggctggtattcatttaataatgtattcttttaactgcctatgccttgtatattgt
catttcaacctgtaatcaatacaataatgctatgattttgcacacttgaagccttcctga
ctcactgtacgtgtcacacatatgtctcattaggactggccatattccaagtactccgta
cccacatgtgtaagaagctaccctgcaggagagcagagattcaaaggcgggacctggacc
atcttgtgtgtccccatcccatcttctccccaggtaaatcacacaaattctggttctttc
atgccctgtgccttgactcactttgtgccttcttcccttctgagcccttcattctcagtc
cggggcatcatatgctaggctagtgctgctgcactgagctaccccccagccccaacacct
ttagtcattgttaaacctccagtctctgcccagctgtccaaccaaaccaacacctgctca
tccgaagccaagtttgagaaccagccctgttctttcttccagagtagaactaactagact
ctattgtatttggggctccatgccaattaatacccatagttcattggggcactgacccac
tgtcttcagtgattgttgacacatgagatttaagccccttagtgcccaggaacttgactt
gcttttttgcctaccgtgccaatgcctgagctcatcaaatgtgcttaataaatgtttgga
catcccactctacagatactagctaagcaatgttcactgttgccctgttcacatacataa
gaaatggaaataacttaaatgtgcttcaacagattaatggataatgaaaatgtggtccat
atacacaacaggacattattctctaaaggaaaatgaaatcatggaattggcaggtaaatg
aatggaacgagaatcaattgaggtaattcaggcccaggaagactgcgttctctcgattat
tgctttcttgctccaaatcttcatatgtgagtatagaacatggaatgcccatcacagaaa
gccacaactggacacacgcagagatcaatggatcatggggagcccagccccaatggtGAC
ATCTGCATCACAGCTCC
Primer
(+)GTTGCCCATGGTGTCTGTTC
(+)GGAGCTGTGATGCAGATGTC


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