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Mouse element [ mm2197 ]


Position: chr9:63,609,593-63,614,200 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTAAAGGGGGCTGGCAAGATggctcaacagctaagagcacaggctgctcttacaggggac
cctactcctgtttctagcacccatatagcagctcacaactgttaactccagcctcaggag
atgcagtgccctcttctggcctctgtaggcactgcatatatgtagtgcacttagaggcag
ggcaaaacactcataaaaataaaacacttaaaatagatatgtctaaaaaacatactggac
acagtagaatagatagatgctggagggcaattaaatggaaaggaaaattaaagctgaaca
gaaagaataatttccgggatctgtactgatcattgtcttgtgttaggaagactgtggtta
gccaaattctttggacagtcttggcaaggttaaggtgttatgttctgcatatagcatcag
taaaaatgctaattttttatggcttgctcaaaagacagtgcctatgcctttcagccccac
ctagttctgggatcaagatctctcatataaggtgaacacaatgaaaatgatattaaatgc
ttgtctaaatgcctccccaaggatgtttgcatggggggtgggggtcccatggcatctttg
taagcacagccagggaccaggtctgctctgtatgagcctttcagatttcaaggatgaggt
catatttaaggttcccatagttatggactggggatgtagctcagatggtagagcgcttgt
ttaacatgcatcaagccctgggttccacaccccaaaaaagtgtgcatggtcactcatgcc
tataatgccaacattagggctgttgaaggcaagaggaacagacaatctttggctaccaca
gggaatgttccagggcaacctgggctacatgagaccctgtctccaaaaagcataaaaata
aaactaaatcatagtctccgttgttatcactgtttcataaaagacaaaccagagaccccg
caaactgagccactcctggcctaaactagactggatattgactgccagtccaggctgggt
ccctctgtcaccacagctctcattgggatctctagtgttgatcttggagtgcccctggaa
gatcaaggctctgacagaaggaaccagtgtggctctgtccagggaaagtcctgaggggac
ccgggagcagggccaaggctgcaacggtcaagtgagtcctgtggatcagtgagtggagcc
caggtcctatccatgaaactatattgagttttcttacactatctccctcctgtttaagga
attgaagacctgagatctctggggtccttcctgttcatggtttatttttttcagaactca
gccctacctgttttcatgaaatggatacacgctctgtgagttttctccctgtattcacat
ggccgttgtgtttatatttatcctgtacaaatgcacatatcttcacagaggtcactgagt
tttccctttcctcttcctgggataattagtcactatcatggcctctgctcctgttccagc
ttatcacatggacccaaaaagtagaggtcagaaaacctggcctacttatcgttgctttat
tttattttattttttttaaagacagatgtgtgtctaaccaccagagaggtgcattcaaat
gaaactttctccaaaagtggcaagattgtatgccttcaaattaccttattaacatcttgt
tattcttccattaaagtcactagatgtgtatcatcaaaggaactgaagtcagggtcttga
gcaaatatttacacacccatgttcatagcatcatttacaatagccaaaaggtggaaggca
tccaagtgccacgagcagacgatggataagcagaatgcagtgtgcagacgtacaatagaa
tgttgttccaccttaaggaaggaaagtccaacacaggctatggcttctgtgtaccttgag
aacttcttaagttcagtaagccagtcagtcacaggagacaaacatctgatcctgcatcga
taggatacatcaggtagtgaagtcagagagatggaaaattaccacagtttgcaggcatgc
tgggggttagtgtctaatgggccaagggttctataggataaagaaagttccagaaatgaa
tggtggaccagcaagatggctcagcaagtaaagatgcttgccagcaagcttaccaacctg
agttaggttctcaggacccacacactggaatgagagaaccaacacccaaaagttgtcctc
tgacctctacccatgcacggtgacacacatgtacacacacacacacacacacacacacag
caaataaatagagtttgataagaatggtagtaggaaacaaaacaatgtaaatgcatttca
tgccacagaaagttcttttctgaggaaggtctcatgtatcccaggctgacctcatgcgtt
ctatgttgaaaaagaaaaaggaaattccaaactgaacacaggatgctgtttaaaaaaaaa
aaaatccctgaataaaaataaattttacccaagcgatagtggcacacacctttaatccca
gcactcgggaggcagaggcaagcagatctctgtgagttcaaggccagcttggtctacaga
gagaattccacaacagccagaacaacacaacgaaacactgtctcaaaataaaaaagaaac
accaaaagaagattaaagacataaaggaaacattgtgtgtggggggggggtgactgcagg
ggcatctaccctgagtgaggaagtagaccccaatgtctatggaggaggaggcagaaggcc
atagagcttttgtatggtcagacactggacgtggcaggagaagaatgaaatcctgacttc
aaatcctgcctgcattaagaatcttctcctcactcaccactctgtatccgcagcctgtgg
gaactcctggctctgatttagagaggatgacgtaaggttagagagacaagggaaagctgc
tcaccgccagagctcaatcttactgtgtggggtgggggtggggtagcttaaaggtaaata
tgtctggtggttattgcaaaaacagaccaccttcatcatagagagatgattttaaatttc
actatgactttctgctcataaaggctctctgttgtaaaaaaatgaaatgaaaccaagttc
tgcctgtgctgtagccttgaaaactattcttacatatatatataaaaaaatagtctcagg
aggccacagtctaagcgatcccaccactaggaaggtctgggagaagagcatctttgaaac
agaaagactagttgtcaagggctaggggaggggctagggagtgacacctgaatgttcgaa
atctggccaccaagctacagttagtgttgactcacacctgggcaacatactgagaataat
aacaataagggacttttgggagctcaaccttaaactaggggcgtctgtatcaacaccctc
catgctcagggacatctcaggagggatgctgcaagagctcaggaactggaggatggagtg
ctgtgaagtgcagcctactgaagacaacatggctgttgaactcactgcagtgatggatac
tgtggtggtttgaatatgcttggcccagggaatggcactatttagaggtgtgtagccttg
ttggagtgggtgtggtcttgttgggagaagtgactttaagacccttatcctagctgcctg
gaagtcagtcttctcctggctgccttcagatgaagatgtagaactctcagctccacctgt
accatgcctgcctggatgctcccatgctcccactgtgatgaaaatggactgaacctctga
acctgtaagccagccccaattaaatgttgtccttctaagagttgccttaggccaggcagt
ggtggtgcaagcctttgatctcaggactttcgaggcagaggcaggtggatttctgagttt
gaggccagcctggtctacagagtgagttccaggacagtcagggctacacagagaaaccct
gtctcaaaaaccaacaacaaaacaaaaaacaaacaaaaacccaaaacaaaacaaaaagag
ttgccttggggtggaggtgggctggagaggtggctcagtggttaagagcactggctgttc
ttcctgaagacccaggttcaatttccagcacccacatggcagttcacaactgtctataac
tctagttccaggggatctgacacccttcaccaacaggcagaaatacaggctaaataccag
tgcacatgaaataaaaataaataaattatttaaaaaaaaaaagaaaagaaaaaagagttg
cgttgcccatggtgtctgttcacaacagtaaaacccctaactaagacagatacctatgga
tcttggcacaagatctgcacaaagtcaggctaacaccactggtctggtcagtattccagc
aggtgggacttattggactctgggctacaaaaacaaaggagaggactctaaggtgggaaa
ggggcgtgctcaggctgtacctaggggactgggggggggggtggaatagagatgatcaaa
atacattgtgtgtaaatatgacaaagaataaataaaggttatgcagaatttaacactggc
ttctgtggttgtttaactctgaatacacTGAGCACACCTCAATTGCCT
Primer
(+)gtaaaGggggctggcaagat
(+)AGGCAATTGAGGTGTGCTCA


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