Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2196 ]


Position: chr9:63,605,122-63,609,612 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCTGAGGCTAGGCAAATCCGaaggttttgtttggggtccctccacccactccccgtcccc
tacaggcgcgcgcacacacgcgcacacgccctccctctccacccgggccgcgctaggggg
ctgggccagtgcgcccccagccgctctgggaccccacctggggatggtaatgcacttggt
gttcacgttctgcgtggtgatggccttctccagctcgtccaactgccccgtcttcttgag
cttcttcaccaagctcttgaccgccttctcgcaccacttctcctcctgcccgttctgctc
gcccttcttccaacccagcaggcgcttcacgatcgggggggtgaagggcaggatggacga
catggctggcaccgaagggtcaccggcgcccccggcggggctgggcgcactggggacgcc
gggggcgctcagaggcagctcggcccgcgcctcgcccgaacttcgcttttaactctggag
aacttgcccgggcgtccgggccaggactgcggcgctgcagctgcggggatcgggagcacg
gcggcgcccgagctgctccacgcggaccgacggactgacgggcaggccccggacgcgcgg
ggcggaggcggcggccgcgagactccaagtggcagtagaaagtttgggtttccgcacggg
gtagctgtttgggtgccgcctccgggaaggaaagtccaacccccagccaaactttgctgg
cctggatggctttggtgcgcagatccctccgcctctgcagcgctgctcctcctcctcctc
ctcctctgcgatcgccgccttgcagggccagccagggccgagcagccgcgctacccgctc
ctctcccgcccgctcccaagtctacgtttcacgcagctccgcgtgcagcctccttcccag
cgcagtcgccgccccctcgctgccggggctccccgctcctcccccgcgccctgctccggg
gaggacccgcggccttccccgcccagcgccgccaagcgcgcccacgtgggccaccgggta
gggcggccgccagctctgccaagtgccgagggaccggactcctggggactcgccgcccca
cagactctcagataccgttgcaggaactagagaggattagactcacagggaacaggcact
gtccgtcaagggctggctgcactccggagaggactcgggcgcggtgaggggttcagaaaa
gctccgggcccaggaagttggggcacgctgatctcgctcagtggccagagctgctttagg
tggttttttgttttgtttttgttttcctgctgggtgagatcagaacggccgactgcctga
gactgcggaggagggagttggaaaaggggagagggagacttaaaaggagttaagagacct
cagtgacaacttgaacaatagctggagccaggggtcccttgggcccagtgaaccaagctt
tttgcagaaaacgggcctcaaagacatctgttgcgttcctgaaggaatgaatgggggtgc
tttaggatttttctttggaggaggggagagaattaacatttcagggtgttactgaagttc
cgaaattcgacaccaaacaagtaagagagcttttgtttacaaagcaatgaactcgcacac
acaaagagcaagccggagaggactcgagaagtttattcaaagttagcctaggtgggaagc
caagagaacctgactttgagtagccctaggggctttactgcagactagacgaattcaggg
ctggttgcccacggtccctccacggatttggggcgttacattagaccctctgctccttta
tcctgtttcagcctccctatcaggctagcccagatgcttagagtgtgcttggttttgcgc
acgcgcgaacacacacacacctatttctctcccgtggtgagaaacaagttatttgcaaac
caagatccggtgcgctttacgaagccctatgaagtgtggctcgtcccacagagtcagccc
tgaagcttcaggggccccctgctctgtcctcgaggctgccccaccaccaaccgccagcgg
cagcttgtcaggggttgtggtttccctccttccacctccctggtaagtcctgaaaggaag
acccctgaggctcagtagacctcagcaagccggttcctgcaaaccagttagatggtggct
gcagcctcccttccacttgctgctagagactataaggaaggaggtcctttttgttttgtt
tcaagacagggtttctctgtgtagctctgactgtcctaaaactcgctctatagaccagag
caaagctggcctcgaacagagatctgcctgcctgtgccttacttggcattaaaggtgggc
agtcttcactgctgtgttcaaacagataccaatcactgccgttaaaagcctgagaggcac
agcaccaagggtcagagccaggatttaaacccaggtttttgtttggttttggttcttgct
actggccctagaactgtaaagctaggacacaatgtgcaaaacaagagcttttctcacagg
tgcaccattatctccaggaatggtctcaggccctttcctcgccacctcctaggctgctgg
gactttgcagaagtcctaagcaagacaaaaagtggaggccagtgttgattcatgaagaag
ggtagccaggagagctggttcaaatcctgcttctctctctccagcgcttcctgtcacaaa
tatgctacttgttgagaaattcacaatgaacgaggaaggtccttaaccactaggagctcc
cagccagagaagcaccaagggatagggatgaaggtttgcttaggagggcagaggacagaa
agcggcctatgtaatcatcttccagtaagaagttaatcttagccgagcagtggtggcaca
tgcctttaatcccagcacttggggggcagaggcaggtggattcctgagttcaaggccagc
cttgtgtcttaaaaaaaaaaaaattaaataaataaataaaaccgctggcatacaaaaaca
aacaggtgtcatttctaacctccatctttttcctgagtctgagaatgttttgggggcaca
aaaccagtttcccatgggggaggaatagacccctctaccttggtcagtgagtaggtgtgt
ggttcaggattggttagaacttcagctggcacctgattgcctaggacccagccagacctg
ccctgcagcctttgcccttgtccttgggagggaaacattagtccagttaatttttcatcc
tggtgggtgcaaagttcaggagaggcatgatcgtgggtggagacagccatgtctccctag
gaatagagaacacagtcaggtcagagcctaagacacccacatgctaaagtgtgtatgatg
gggttcttgggggggaggggggatcgtgcaaagaaagggacaggaacacctggccacagt
gaagataggtaatcaacaggtggtgaatcgagaaagcgtggagagggttttccctacatc
tcacgcagaagggtgacgcctggtgaaagcaggtgggcaagcagggctgggatcatcggc
agaggccctcctgcaggagacagtctgtctgcaggttttgtctagcaggtttttgtaggc
catacccaaagaaacctgggttcaacatggagtgccatgtccagccgagaaccaacttct
agaagttgccctctgacctccacgggcaggctgtggcacacatctgcctcccgtaaatga
aagtccatgcacaaataagtaaatgtagttttcattttatataaagccactgttccaagt
aaaaatcaataaattactaatacgatgctatgtatgtaaaagataaagataacacacagc
aaaatactgcacacctgttgggctgtttggtcttgtatgccagttagactaggaagggat
tgggccacgtgtacactgccaccaagagtgtaaaacagtgttggcttggggagaacagca
taataatataataattacccaaaacaataaaacatagaattatcatggggcccaacaatt
ctgctcctggccatacacacatacactcaatgaaagcaggagtccaaagatagtatttgc
acaccaatattcatagcaacattatttcacaatacccaaagctggaaaccccaccaatga
ccctgagagacagagtgaggactgtctgcacagtggaatattattcagcttttaaaagaa
tgattttttgctgtgacgcagataagcctggcaaactctatgccaagtgcaataagctaa
tcacaaaatgactaacaccgtgtgattcacgtttgtagagacagaaagcaggtggtgctt
gccgggagcggagggaaaggaacaggaagtgctgtgagttacttactgggcatggagctt
tggaacaggaagatttctgaaggtggactatggcgagggttcttcagcagcataagcgta
ggcaatgcccggaactgtacacttaaaatggGTAAAGGGGGCTGGCAAGAT
Primer
(+)TCTGAGGCTAGGCAAATCCG
(+)atcttgccagccccCtttac


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.