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Mouse element [ mm2191 ]


Position: chr13:15,326,333-15,331,630 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCAAAGAAAGAGAGACCTTGGAatgctcaactcaaaaatagatgtctccataaaatccct
cctctaagtgatagggaattctgtagaagaggaggcagaaactatgtaaaagccagaggg
gttggaggacactatggaatcaaggttttgtagatacaatagggctggtgcacatttgat
ataatagggctggtgcacagagactgaaatagcatgcacaggtccagcatggttctacac
taaatggggtcctagagcttaaaggagaagtggacatatgcccccctcctgaacccagaa
actatttctaattgatagtcacatttaaatgaaaaatttgttttctccaagtaagtctca
caagggaaacaaacaattcttaagtgtaggactcatgcctagcagtagttggccaacata
aaatgaacccactggcatttttggaggttcttattttcatgattttatcagggcatttta
attttgtacctttcatgtcctttgcatttatactatgacttctagtttggatttttgtca
ggctactctgtgtgtgaatctgtgtgtccctgaatctatgattttcttgtgccactgcct
cctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctccttctctcttt
atggctgttagcttgatgctttgtgggactagcagcgggaataggtgtacctttaactct
tttgcctgctcatggtacttttttcctgtactgggttccattatccagcctcaatatgag
agtgtttgcctcatcttaatataacttgttttctcttgtttggctgtcatatattagagg
cctactcttttctgaagaagaaatggagggtaatagatctggggaagaggagagctgtag
aggggctaaaaggagtggaggagggggaaactgtggtcaggatatcttatatgagagatg
aatgtatgtttttttttaaaaaaaaaacctacaaaaaaacacaaagaaaaaagaaagaaa
ataaattcttttctcatacaatatattcagatttcagtttctcctccatatactcctcca
agattctccccacttcaacaacccatcatatccactgttctgtgtctctcagcagaaaag
aacaagcttctctagagactttgaagcaatgacttatttcaatgagcattcacaagtgaa
gatatgtggacaaagggatacattgtgggacacactgtgacacactacagcttccacaat
gagatatttcccatgctttgttttgttttgtttgtgcatgagcatacatatgtgtgtgtg
tgtgtgtgtgcatgcacatatgtgtgtgtgcatatgtgtatatatgtgtgttttattttg
ggaggaatgttgcaagggcaagggacaaatatgaggagaatggaaaatgatcaaaacggg
ggtacatcatatgaaacacaaaaaatcaataaaacatttttaaaaactggattctaatat
atatcaatgaatcatagcaaaataaaatataataagataaaacaaaagctagcacatcca
agccctcagcttctgtagagcaaaggacactgctattcaaagaagcatcctaaataatgg
attttttttttacctgttccacatccaacagatgactaatattcaacatatgtaaaaaac
tcaagaaactagatatcaaaattccaaataatccaattaaataatggggtacaattttaa
acagaattctcaatagagaaatcttaaatggctgaggaacactaaaagaaatgttccaca
tctttaaccatcagggaaatccaaatcaaaactactatgtgattacattttacacctgtc
agaatgactaagatgaatagcacaagtgacagttcctgctggtgaaaatgtgggacaagt
agaacactgctcccttgctggtaggaatacaaacttgtacacagccattatggaaattaa
tatggcatttcctcagaaaactgggaatcactctacctcaagattcagctatatcagctt
agggcatatagccaaaagatgcttcatcccactatgatgacatttgctcatgttcattgg
tgctctattcataatttcaaggaactagaaacaacctagattgttcttcctcaacagaag
aatggataaagaaagtgtggtacagggtcgccatcttggttccgggactcagcagaactt
aggaaattagtccgaacaggttagagggtgcgccagagaaccagacagcttctgggacag
gcggaagcacagagccgctgaggcagcacccttggcgggccacagacagctggccaccgt
ctggaccagaggacaggtgtccacctggctcgggaggcagcctcagcctcagcaacagcg
gtcgccatcttggttccgggactccgccaaacttaggaatttagtctgcacaggtgagag
tctgcaccacagaagctgacagcttctgggaactgccaaagcaacacagcttctgagaaa
ggccctgttttggggcttcttcttcgaccaggaggaggtccaaaaacaagatatctgcgc
accttccctgtaagagagcttgccagcagagagtgctctgagcactgaaactcagaggag
agaatctgtctcccaggtctgctgggagacggtaacagaatcaccagaagaacaatctct
aaacagagtcaactataacaactaattccagagattaccagatggcaaaaggtaaatgta
ggaatcttactaacagaaaccaagaccactcaccatcatcagaacccagcactcccactt
cgcccagtccagggcaccccaacacacccgaaaagctagacctggatttaaaagcatatc
tcatgatgatggtagaggacatcaagaaggactttaataactcacttaaagaaatacagg
agaacactactaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaaacagg
tagaagtccttacagaaaaagaggaaaagacatacaaacaggtgatggaaatgaacaaaa
ccatactagacctaaaaagggaagtagacacaataaagaaaactcaaagtgaggcaacac
tggagatagaaaccctaggaaagaaatctggaaccatagatttgagcatcagcaacagaa
tacaagagatggaagagagaatctcaggtgcagaagattccatagagaacatcagcacaa
caatcaaagaaaatgcaaaatgcaaaaagatcctaactcaaaatatccaggaaatccagg
acacaatgagaagaccaaacctacggatataggagtggatgagaatgaagattttcaact
caaaggaccagcaaacatcttcaacaaaattattgaagaatacttcccaaatataaagaa
agagatgcatatgaacatacaagaagcctacagaactccaaatagactggaccagaaaag
aaattcctcccgacacataataatcagaacaacaaatgcactaaataaagatagaatact
aaaagcagtaagggaaaaaggtcaagtaacatataaaggcaagcctatcagaattacacc
agatttttcaccagagactatgaaagccagaagagcctggacagatgttatacagacact
aagagaacacaaattccagccaaggctactatacccagccaaactctcaattaccataga
tggagaaaccaaagtattccacgacaaaactaaattcacccattatctctccacgaatcc
agcccttcaaaggataataacagaaaaaaaccaatacaagaatgggaacaacgccctaga
aaaaacaagaaggtaattcctcaacaaacctaaaagaagacagccacaagaacagaatgc
caactttaacaacaaaaataacaggaagcaacaattacttttccttaatatctcttaaca
tcaatggtctcaactccccaataaaaagacatagactaacaaactggctacacaaacaag
acccaacattttgctgcttacaggagacacatctcagagaaaaagatagacactacctca
gaataaaaggctggaaaacaattttccaagcaaatggtatgaagaaacaagctggagtag
ccatcctaatatctgataagattgacttccaacccaaagtcatcaaaaaagacaaggagg
ggcacttcgttatcatcaaaggtaaaatcctccaagaggaactctcaattctgaatatct
atgctccaaatactagggcagccacattcattaaagaaactttagtaaagctcaaagcac
acattgcacctcacacaataatagtgggagacttcaacacaccactttcaccaatggaca
gatcatggaaacagaaactaaacagggacacactgaaactaacaaaagtgatgaaacaaa
tggatctgacagatatctacagaacattttatcctaaaacaaaaggatataccttcttct
cagcacctcatggtaccttctccaaaattgaccacataataggtcacaaaacaggcctca
acagattcaaaaatattgaaattgtcccatgtatcctatcagatcacaatgcactaaggc
tgatcttcaataacaaaaaaaaaaaaaaaaataacagaaagccaacactcacgtggaaac
tgaacaacactcttctcaatgataccttggtcaaggaaggaataaagaaagaaattaaag
actttttagagtttaatgaaaatgaagccacaacgtacccaaacttatgggacacaatga
aagcatttctaagagggaaactcatagctctgagtgcctccaagaaaaaacgggagagag
cacatactagcagcttgacaacacatctaaaagctctagaaaaaaaggaagcaaattcac
ccaagaggagtagacggcaggaaataatcaaactcaggggtgaaatcaaccaagtggaaa
caagaagaactattcaaagaattaaccaaacgaggagttggttctttgagaaaatcaaca
agatagataaacccttagctagactcactagagggcacagagacaaaatcctaattaaca
aaatcagaactgaaaagggagacataacaacagatcctgaagaaatccaaaacaccatca
gatcattctacaaaaggctatactcaacaaaactggaaaacctggacgaaatggacaaat
ttctggacagataccaggtaccaaagttgaatcaggatcaagttgaccttctaaacAGTC
CCATATCCCCTAAGGAAA
Primer
(+)GCAAAGAAAGAGAGACCTTGGA
(+)tttccttaggggatatgggact


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