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Mouse element [ mm2189 ]


Position: chr13:15,149,179-15,154,258 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCTGGAGGTTCCTCAGAAAGTTggaaatagatttacctgaagacccagctatactactct
tgggcatatacccaaaagatgccccaccatgccaaaggggcatgtgttccactatgttca
tagcagcctcatttgtgattgccagaagctggaaacaacccagatgccccaaactagaat
aatggatacagaacatgtggttcatttacacaatagaatgctactccgctattaagaaga
aggacatcatgcgttttgcaatcaaatggatgaaactagaaaatattctcctaagtgagg
gaactcagacaccaaaagaaatgcatagtagatattaaccaaaaatgtacaaaataccca
gtacacaacccacagaactcaggaaggttaacaagctgaaggacccaagtaaggatgcct
caatcccacttaggaagaagaaagcagtcatgggggcaaagggagggagggaccaaggta
agaggggacagggaagggagcaggggaacatgatcaggtattgggggggggagcaggact
gaggccctggggaccagcagagagatgggaaataggcaatcttggaaggtaggaggtagg
ggaccttctgaagtgtgctagagacctgggaggtaagagactctcaggactcaaagggag
ggaccttggatgcagtgctctacagtggggagggggaacttgtagagtctacctccagtg
gaaggacaggacatcaagtagagggatgggttgccattccactgtcaaaagatctgaccc
agaattgttcctatctgaaggaagagcaggaacaaaaatggagaagagcatgagagaaag
gaggtccagtgacagaaccaaattgggaaccagttcaagaggtgccccctgacactgata
ctgatgctgtggtatgcttgcagacaggagcctagcatggctgccctctgagaggcccaa
caaacagctgaaagattccaaagcagatagtagcactcaagcaaaggacagaagccagaa
cccctgtggttaaattgagggggaaagctggaagaagctgaggaagagggcagccccata
ggaagaccagcagtctcaactgatctgggtctccaagatctctcagacactgagccacca
accaggcagcattcaccagctgatatgaggcccctgacacacatacatcagagggctcaa
tgagtaaagatgacccaggaggtgggaagacctgttggggtgggggtataaaggtgggac
atcctcttggagacagggttgggggcagaactatgggatggggagtaataaaggggcaga
ctgagagggggatgaaatctggactgtaaaaaaaaaaggattaaagaataaaaataaata
aaatttttgaaaagaaaaaaatcaatgaccctgagtataaaatgattaagaaattttgga
tacaatgtaaagagtaagaaatatgttaactgttcattgtgtttatatgatcatttgtgt
atgctccatattctatgtgttacaaaaccatctatatcttagcaaaatgcgctcctttat
taaaagttaagattctaaatttaagagaacattgtgtcagagtatgattggcagcacact
ttcccttcctgtattatcatgctaacaatggcacatcatatgatgaaacagtggcattta
tctaaatggtttaatttttctcttatgcactaacccttttatgtcaaattgtatttaaca
actaattttagtcagagattctgcttattgtaccacactatgtagattggtctaatattg
ctttgtgtccagcttcatattttaaactcatgctctcttttctagttcattttattattc
ttaatcttcttattcttctagctttcagtgaaacttggttgcattctttttctacacccc
cattcctgtcctgaccctgctccatcatacttcttcagtagcttgcttggatcacatata
agtggttccagtctcaagacccagcttggatgaacccagccaagataacccagccttccc
tcaacacacacaccttactgcctgtaactgtttctccaatcagtcaactaatagaaccat
cacttgtagcccagatcagcttggataaaaactcctccctcattgcctgttcaatcctga
gagtatgttcaagttaaactcattcacacatttttgctcagtatggaccaagcagttcct
ccgtgacagctgctcctctttgatcagctcaacagaggacactgaaagaaatacttgtaa
ccgaagaggataaaaacaccagcaccattgtcccagatccaagcatggtggcacacacct
gtaatctgggccacatcatcagcttaagacctacgtaaggacattggaagaaggaagatt
ctctctcctttgcctgcttgcattgtaggactgagcaactgctagatccttgaacttcca
ttcacagctactgctgttgaccattgttggggggttggactacagaccataagtcatcag
caaattcccttactatatagagactacccataagttctgtgactctagagaaccctgact
aatacagaagttggtaccagcaatataccttttcagttttgcctcaaggatattttaact
cttctgccctgtgtcataacttgatcatttgtctctttcacaaattatcacattggtaca
ctatattgatgacattatgctgattggaccaggtgcgcaggaagtagcaaccactttaga
ctcattgataacatatttgtgtagcagaggatgggaaataaatccaaccaaaattcaagg
accttctacctcagtgaaattcttaggtgtccagtggtgtgaagcatgcagagatattcc
ttctaaggtgaaagataagttgttgcacctggcccctcccaccaccaagaaagaagcaca
acgtttagtgggtctatttggattctggagacagcacatccctcacttgggtatgctacg
caggcccatttaccaagtgactcagaaagctgctagctacgtgtgcagcttggaacagga
gaaggcttgtcaacaggttcaggctgctgtgcaggctgctctaccacttggatcatatga
tccaacagacctgatgatacttgatgtgtcagtggcagatagagatgctgtttggagcct
ctgtcaggcccctgtaggtgaatcacagaagagacctttgggattttggagcaaagctct
accatcatcttcagacaactattctccctttgaaaaacagctcttggcctgctattgagc
cttcatggaaactgaatgtttgacaataggatatcaagttaccatgtgacttgaactgcc
catcatgagctgagtgttattagaccctccaagtcgtaaagtaggacctgcagcagcagt
ctattataaatggaagtgatatatatgtgatcaggcctgagcaggtcctgaaggcacaag
agagttacatgaagaagttgctcaaatgcctatagtttctattcatgttacaatgccatc
tgctgccaagcatgcacctatagcctcatagggtgttccctatgatcgattgactgaaga
tgggaagactaggacctggtttactgatggctctgtatgttatgcaggtaccacccagaa
gtcaacagctgcatcattacaacccctttccaggacaaccctaaaagatacaggtgaagg
aaaatattcacagtgagcagaacttcaggcagtacacatggtattacattttggaagaag
aaatggccggatgtatgattgttcactgttccttggctgtagccaagggattgactggat
ggtcagagacttggaaagaagctaacctccaaacaacccaatcaaaaattggagtataga
gctgaaaagagaattcacagcagaggaatcttgaatgaccgagaatcacttaaagaaatg
ttcaaagtccttagagatcagggaaatgcagaataaaaccaccctgatattccaccttac
accaatcagaatggctaagatcaaaaactcaggtgacagcacatcattctgtggagagag
aggaacactcctccattgctggtgggattgcaaactggtacaaccactctagaaatcaat
gtagagggtcttcagaaaattgaaaatatatctacctgaagacccagctataccactctt
gggcatatacccaaatgatgtcccaccataccacagatgcacatgctgcacaatgtttat
agtggccttatctgtgatagccaaatgctaaaaacaacccagatgtcccacaatggaaga
atggatgcagaaataaaatacatttacacaacagattactattcagctatttcagaatgg
gggacattataggttttgcaggcaaatggatggaactagataccatcattctgagtgaag
taactcagacccaaaaggacatacatggtatgaactcactcataaattgatattagccaa
aaaatacctagggtacaatctacagttctcaagaaggttaacaagcagcggggcccaagt
ggagatacttcaatcccacttaggagggagaagaaagcagtcaatgggggcagagggagg
gagtaacctggtgggagaggggaaggggaggggaataagagaacatgatcaggtatgagg
gtgaggagacaggagagaagccctgagggctaacagaatgaatggaaatatgtaacctgt
gggttgggtggtgggtatactctctagaaagtaccagaaacctgggaggtgagagactct
caggacttagtgggaggaaccttagatgaaatacccaatagtggagagagggaactcata
gaatccacctccagtagacagacagggcatcaagtggagggatgaggttgccatcctaca
gtcaaaatttctaacccagaattattctgtctaaaagaactgtaggaacaaaaatggaaa
aatgattgagggaaaggtggtccagtgaccagcccaacttgggatccatctgaaggggag
actccaaggcctgatactATTACTGATGTGTGCCTGCAGA
Primer
(+)TCTGGAGGTTCCTCAGAAAGTT
(+)TCTGCAGGCACACATCAGTAAT


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