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Human element [ hs2186 ]


Position: chr5:172,705,328-172,708,211 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NKX2-5 - STC2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGCTGCGTAGACACCATTCcagtgatgaaggctggcacaggaggcccctgggcagggtt
caggcttccagacaggcctggccacgtgatgagtggttgcgtggacagaaatgtgttttg
aatccaactcttgtttgccgggtttattctcagtgcctgaatgtgctagaagcgaacaga
agccaggatgagggcctcaccccagaagagcttgagttgtcagcgagaataaacctgggg
acagaagctaaaaaatcaggaagtgttgtgaaccgagatacatgacatcagagagtgctc
tgaatgcaactgccatttttatttttcaatattatacttttatatcttttctccttttcc
cacgttctgttaacgtaagatgatagggaatcaattttgcattgatattagtccaggtta
gggaggcggcagggcccagctaaatgcctgcgtcctgctctgggcctctagagaggtgct
gagtggtgagggggcctgggtggacgctgggcttctcctcagcagggaagcactgccaag
ctagagaggctggctgcattctatctccctccagggcagaaatagacctgggggaggatg
catgctgtatgagccagatttggccacatatattaggaagacatttctaatcacaaatgt
cttaatgaaagaacaaaatgcctcatggagcaaggatgcacctttgcagtttaagtggag
attggaagctgttctaggggtgttggtccttccaagccttgactctataatctcaataat
aattaaagagcaagtaatatctactgagtgcaaaccatgtgtcactttacatatattaat
ttacttaatccttacaacagccctggagctaggcattattattattggcccattttacag
atgaagggcctgaggcgtacagaggttgccgtgaagtttttgttcttttttccatcaaag
tggtctgcagagcgaaagccattctattacaggggttgaaagcctgagctccagtgaact
tggactctagaatttgtcacattcccagctaagtaagcttgggaagttccttcctgtctc
tgagcctcagtgttctcatctctgtaataggcacaataacagcgccttcctattagtgcc
ctacctcttctttttctttctttttctgtctgtcttttgagatgaggtcttgctgtgtca
cccaggctggagtgcaatggcgcaattgtagctcactgcagcctcaacctcctgggctta
agcgatccttccgctttggcctcccaaagtgttaggattacaggcgtgaaacaccacact
cggaaaaaaaaatctttccttttggcatattcgcaaacacagtcttcatgatggcctgtt
ctcaggagttcttgggaactgtggattgaatcgagctgcgtgaccctggaacttttacac
gtgggcagggactcagtctgtgccagtgggctgtgtagggtcacctgttgatgctgagag
gcaggaaagcgagaaaggaggaataggtggaacaaaaagagccagaacccgtgagcatct
tcctgagaccttcccttgccctcctgctaactgaacgctttgctttcaccctggcaacaa
aaatgcccaggtctgctggcatcacacatgtcagatatcacactgtcaccattatgatgc
agatgagggtctccagtgaaggcttttgttttctgcctggtgtttaaggccaagcccagg
tcctgcccttctaggcagttctggctgtgtatgtgcgggaagagcatatgcattagtaag
ggacacactggggtccaaatcctggcgtggccactaacaagcgatgcagcgtcaggccag
tgaccatttgtgacctctagttttcatctatgaaaggtagaaagcagcctgggcaacata
gtgagaccctgcctctactaaaaattaaaaaattagccaggtgtgatggcatgcacctgt
agtcccagctactcgggaggctgaggcaggaggatcacttgatcccagaagtgtgaggct
gcagtaaactctaatcatgcccctgcactccagcctgggtagcagagcgaaattctgtct
ccaaaacagaaagataaaaagggtggaaagcaccacgtactgccacatgaggttgttgag
tgcattaaatgggataatgtgtgtgaagtactcagtgtaatgcttggcacctaatacatg
gtgaggcttaatacttggcaaagaattattattatgtcataggtagataaaccaagttgt
tcaaataagcggttattattacgcgatagtgtctcctgccattttcttccattctcttcc
cttcctggtgaaattctgcttttctataggaaacagagctaacttaagagatgcatacat
tcttcttttctaatgtgtttttaaagagtccacattttctgaggagctttctggagacca
tctgtatcttcattcacaggagtgcctctactctggacatccagggacttcggagagctg
gaagcataaggactgtgcaatgacagaatctgtgttttctaccacaccctgcctgtgaat
agtcctaatatttaaaaagtgagtaaacggcccggcacggtggctcacgcctgtaatccc
agcactttgggaggccgaggcaggtggatcacgaggtcaggagatcgagaccatcctggc
caacatggtgaaaccccgtctctactaaaaatacaaaaaaaatttagccaggtgtggtgg
cgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatctcttgaacctggg
aggcggaggttgcaatgagccgagattgcaccactGCACTCCAGCCTAGCGACAGAGTGA
GACT
Primer
(+)CTGCTGCGTAGACACCATTC
(+)agtctcactctgtcgctaggctggagtgc


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