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Human element [ hs2184 ]


Position: chr5:172,682,692-172,685,952 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NKX2-5 - STC2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATTTGTTGCCCAGACTGCTCtcaaactcctggcctcaggtaatcctcctgcttctgcctc
ctgaagtatagcaattacaggcctgagccattgtgcccggccacattctgtttctattag
acaatgttgtcctagacctttccctatgcatttatatgcatacatatgcgcctctgcacg
tataattacaagaaaagataacagggatcattcattttgcattgacctacggtttgcttt
tttctcttaccagcctgtttcagagatctttctacatcaggacatatagatccacttttt
ccctttaaagggatgcataatattccatactgacaagccatggtttattaaaccatttcc
tattggtggacatttgacttgtttctctggcttccctgttactaaccaatgaacatcatt
gctttttggcttgtttttaatcccacatctcttggcatgcagaactatttggggtttctc
agattcttcctgaaaaacataggtgatgatgtagtgaaatgtcgggtaactgtatggttt
attgtccacatgggaactttgagagtgaaagacaatgatagcagtaatgattccaggata
tgaagaggtacagactcagactgccctgtgcagattttggacatttggtcactagggcca
gagacagagtccgaatgcgtgttttaataggagatgcttcacaagatgaggatctgaagt
cagtccaagactgtctcaaacaaatgctggaatccagcctccagcttcaccctttccttc
tgtccggtaactggtgggcattggggtagccccctgaggctgggggaagggacagggtaa
gcaatgaaaatatccaaagagaaaggctcagtgaatgaggagtctcatttgtgggaggcc
ctaccccataggagctctttgtagagtaaatggtgggcaagtcagcagagggtttgcaga
ggttgatttcattcttgaccactcgtggctaactcagggacaatcgaactgctgtgacct
tgaggggaaagaccccagatactgttaccggctccttcgggaaacctccactctcttccc
gccctcctttctgtgactaatttctgaaatctctgtaactgagaaggcattggatgaggt
ttcccactctgggagggccctgggtgccagactggggcaagggggggctgaggctcctgt
gcagtcacatgccatctctcaagagcaggagcgcaggcctccagattgggtggcagcagc
tggtggggtattgggataacctcactgatgactgggtagatagggctctcttgtgttagc
agagtccagaaaacagtgtgctccctgatgaaaaggccacggtcactgtcttctgggctc
tgcctggctctgacagttctcagctgctccataaatcttccatcagttccatctggccaa
aaagatgtcatcaccgttttctcctagcgacgaaaagtaaaaggtcattaacgaaagcgc
tcctctctgcctgttcaaaccaaagaagatgatcttcagtttttcagtggaaggggaaat
gagtgttgaggttgggttgtttatgtatagtaatagtttatatttatatgttgtacatga
ggataaggaggatgattatgttttgggtattattgaacactctgggcacccacatactta
aaacacagaacattacaatctggaagttaaaaggaacattagtgcttatccagttgtttt
cgagttttttgctttaaagcaatggaacactcatagcaaatgatatgtttatgcaaaatc
ccaatacatcaaacagaaggactgagcgtagcagaggcctggcactcggggctttcaata
ccggctccccctgacctcatggtggctcctgtttggaaacttctctgtttaaatttctat
ccagtccctaaatcctcattgtagcatccccagcaattgattgttacggtcttgcctctt
cctctcacacccccagtgccttggaaagcagcctctactgtgctaagacagagccaatgg
tcagaaagcattgctttatcatttgctattttttgtatattttgagatagggacttgctc
tggtgcctaggctggagtgcactggcgtgatctcagctcactaaagcttccacctcctgg
gctcaagtgatcttcccaccggagcctcccaagtagctggggccacaggtgtgagccacc
atacctggctaatgttttaaaaattttatgtagagatggggtttctctgtgttgcccagg
ctggcctgcaactcctgggctcaagcgatcctcctgcctcagcctcccaaagtgttggga
ttacaggtgtgagccactgttgctggccagaaagacttactttaataacaataaaattct
cttacctactcctctcccaaatctgcgatccccagaaggttctaacagtagcccatttag
tacctgtgctggagacggtggatatttccaactgctgagccatggatgtgctaaacaatg
actgcgtcctttgcttggactgtgtggtctgccggggatctggttcatcttgatttgcac
cgtgtggatgctgtcaggggcagaagtcggccacatgtcaccctcacgtcaccctcctcc
ctcaagagaccttgttggaaggctgggagaggtgcagaggcccatgcctgttcttaccat
ggcctctggtctgatgcttttccggcacacagggatagccttgggttttcatgttcccat
gcagacaccagccttgcaaaggagtcgctttatcagctggtgttacccaggttggaggct
gatttggtaatttcctgaaaacaacaacaaacccaaagaaacaaacaaaaacaaccagag
gcatagtcagaggcatagtcatcagagggggactcaagggtagcttgggatcttgactgt
cctaacactgatttggcccagaggctgcagagcctggtggtgttggaagacagagctttt
tattgttttcttccaactttctgccagcagtcaccggcagtggtttagtcagtttctgct
tctgggtcatgatgtaaatttaagttccgggctggggataaaaattctaaatgtgctctg
ctagtgtgtgtgtgtacgtgtgtaaaaaaaaaaaacaaaaaaccttatttatttatttta
tttaacattaaagttttttcccacttgtatttttagcagcaaaaactaaaaaattgatct
gGTTCCTCTTGTCCAGCTCCT
Primer
(+)atttgttgcccagactgctc
(+)AGGAGCTGGACAAGAGGAAC


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