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Mouse element [ mm2180 ]


Position: chr9:63,694,087-63,698,917 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCCCAAACTCAAAAATAAATAAGTTAAGAATAAAAAATAgggctggtgagatggctcag
tgggttagagcacccgactgctcttccgaaggtccagagttcaaatcccagcaaccacat
ggtggctcacaaccatccgtaacaagatctgactccctcttctggtgtgtctgaagacag
ctacagtgtacttacatataataaataaataaatcttaaaaaaaaaaaaaaaaagaataa
aaaataattactaaagcctccctctgcacagtcatgttggcctttcctgagctgggcaga
gttccctccactgtgatgtgcaaatttccacacagttcttccacttccacttagaagacc
caatggcacagccctcctatttagaggggaaactgaggctcagatgtagtaatgccccca
aggtcttggtcacacagaggtgtctagactcaacggggcatccagcacacgtgcctgtgc
acacaccttgtgctggggcagcctgggcagaagcagggccagccttgtgctgaggctgtg
aacagtattggggagtctccagcgggcactggggccaacccaggagagctgggacaaagg
caggctcctgagagaacgtggacctaagctctccaaacgtgcttgacactggtagctggg
gacaaggctggtctataggagacaaggctgacctataggggacggggctggcctataggg
gacacggctgacctacagaacactggggcaccattctgctgggtcaccctgcccaagaag
acaccagcccctgagacatgaagtcacacatcagagtcacaatggaaggaagccgtccta
tcaccaccgtggctggatccaattcgatgtgatcttagagccagtgagagccaatgagca
gaaggcagcttcgagagcgctgggctccttgttgcacagattctccaatcgagtggccat
gtgactgaacgtaaagtcatgaaaaaatgaggtaacagtacgatgtttctgaacacacgg
tgcccacaattgaagtataaaccaaaagtgtgcagaagttgaggtgtttctggaagcact
cacccatgccatgtgctatgactttcctgaacccttggttctggtaacacactgtgtgtc
ctctgcgtgatgtgtgctatcatgtcgaccccctaaaaccacatgtcaccatgtaagacc
aacaaacagtgcccactgaacacctgggttcacatataaggctcctctgtggattttttt
ttctttctgtatgtgaaaaaagttttgttcttgtagaaatgtgatttcaaacttttataa
agacatacatattacttttatgtatatgtgtggtttgcatgcttgggtttatatgcacca
catgtgtgtagaagcccacagagaccagaagatggcactggattctctggaactagaatc
acagatggttgtgagtcacctgatgtgggtgctgtggattgaacctgggtcctctgcaag
agctgcaaatgcccctaaccactgagccacccctccagctcccagaacataatgtttgaa
caatggaaacacagatgttaatattctcctaccctcattccttagcacatcaatatcatg
ttaagatatgtttggattacagcgtgagaacattgagtctcaacctgtgggttgcaaata
tcagatctttacattacaattcctaacagtagcaaaattaaagttatgaagtagcaataa
aataagtttatggttgggggtcaccataacacgaggaactgtgttaaagggtcacagcat
taggaaggttgagaaccactgtgttacactgtttgattataaaaactgctgtttgaattg
ttgcctttgggtcagagaatggctctgtgggtaatggctttgacaccagcccctgagaca
tgaagtcacacatcagagtcacaatggaaggaagctgtcctatcaccaccgtggctggat
ccgatgcgatgtgaccttagagccagtgagagccaatgagcagaaggcagcttcgagagc
gctgggctccttgttgcacagattctccaatcgagtggccatgtgactgaacgtaaagtc
atgaaaaatggggcaacagtacgatgtttctgaacacacggtgcccacaattgaagtata
aaccaaaagtgtgcagaacttgaggtgtttctggaagcactcacccatgccatgtgctat
gactttcctgaacccttggtggccacccttctgctactttgcactacatagttattgaag
tgacatttcactcacctccaacgtttataaaatcaaaatatccatcggctctgaaagcat
tgaagacgccatgttctacggtgtccggaggccagcaagagtccatcctttctgtaaatg
caagcaaacacatccaccccattgccctaaacttcagttttaataaatgggaaggttatg
tttgctaggaactcttttaaaataaacttctctgtaatttatgatcaataaatgttttaa
ctaacatgcctctttcatatgctcagggtcacatacatttctcaagcaaaaaaaggattc
tcaagaggaaaaggtttgagcagtattgacttagcatatgcttcatctatatgaactggc
ttcattcgaagatctggactcacaagcacagagaggttcaggaatacgcctgaagccaca
cagcatcccaactcaggtctcccttcctccctttacgctttagcttattcccaagtgtgc
tccactgctgcccgttgctgtcctcaaaggcctagtagactaaacactagggaagctttt
agcggagcagttatcctcccgctagtctatcagacgtcatcttaatccattttgtgaatc
ggtgaccacgaggctaggcagacacaggtccttcgaacccttttatcttgaaccactgcc
tcaggggtgtgttgagctgcacgtaggataactgcctctcccaggagaaggctggcgtgg
tgactcagacatgcaggaacacaggcgccttctagcacctgctctgccacactgagcagg
taacttccatggtcatgtttgcaaaaacagctgcagtccttacatcccaggcagaagaaa
aggaaagggaagagcaaagtgactggaacccagaagccctggcagcatctcacaaagact
agacttcagctgacctctcactgggcggaaatacgtcacatgactagccgcagcggacct
tgggaggttgagtgttcgaaaatataccgtcctgggtgggagtggagctttctgagtaag
gaagcaaagaatactggacaacgtagacatcctttcctaactcagggggtctgaagtgag
gctcggagcttggagatgactcaggggtaagagagctggctgctcttctggacgaccagg
aatgccattcccagcacccaagcggtgacacacagccatctgcgattccagttcaagggg
atctttcgccctcttctggcgtctgtgtgtactgcatgcatgaggtgcacagacaagcaa
gcaaaaacacacacactcacacactctcacacacactcacacatacattcacacactcac
atacacactcacacactctctctctctcacacacacatatatgtataaaagtatatatat
atatgtatgtattttaaaggtccatttatttttaataactatatcatcttccttttattt
ctctaccaagtcaaagccccctcactcttcagggacacaaaggagcccgactcggctatg
ctccaggttcctacagccacctcctccggacacagctcctctgtagtgaggaccacagat
agccagctcctttgctgcgtcacctgttgctaggaagggaagggcataactcatttgcat
atacatgttgccaccaggacaagactcagccccaaacccaattaactgcccaagagcaca
gcgcagacagaagggtgtagaacccctcacttggtgataccaacatagccagtagaacac
aaagggcatttttaactcagtccctgggcactgtggtggaggcagggctgaggacaggat
gatccagtctaaacgtcactggtatatggggccagctgcctgtcccttccatcagcctta
tgcctgacttcctccattcaacttcaaactgcggtagatgaggcaatatctctctatggt
gagggaacaaacctctctcatggagccccaccctcttgatctaacctctttctcacactg
tcacactgaaaggacagatttcaacacacaagagtgaggccaccaatccattaccattca
cttctgtccaccccccagatctgtgtctcaatctagaagggagacacatgccatgtctac
acctaccctcagctcaaccccaggatagggacaggctctgcatggcccagcttaggtcag
aagcacctggtctaaccacgtgtgtcctccacagagagagaggtcggaccctgagtagga
cagcaacaaaggccattcaacggacgccccacaatgacacgcctattccccttagggtgc
tgtcctgtatcagacatgaccattccacctttctgtctttttggtgctggactgacccca
ggatcttttttttttttttttttttttttttggttttttgaaacagggtttctctgtata
gtcctggctgtcctggaactcactttgtagaccaggctggcctcaaacccagaaatccac
ctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccaccacccggctGACCC
CAGGATCCTGTGTGTGCCTAGCAGGGTCCCC
Primer
(+)CCCCCAAACTCAAAAATAAATAAGTTAAGAATAAAAAATA
(+)GGGGACCCTGCTAGGCACACACAGGATCCTGGGGTC


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