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Human element [ hs2180 ]


Position: chr3:52,500,679-52,503,714 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NISCH(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGGTTAGTGCCCCACAGATaagcacgctgcctgggtgtgtgccaagccgaagcatctag
gcctggcctggggtttgcattgagtgtaggtgtatgtgttttgaagtatacttggttgca
gggcatgtgcgcaggcattcttagtgagaatttaagttgcaggaccacagcccagctagt
gtttacatgaagctcaaacctttgcccacggctacacaccaacacagaatcccggcaggt
ggtgggcaggtggtgcggctgatctcttggtcagtaacacactgggagggtgagtgttaa
cagtttgtaaacatagctgacactaagtttctttttcttttttttttttttttttgagac
agagtctcactcttgttgcccaggctggagtgcaatgatgcaatctcggctcactgcaac
ctccacctcctgggttcaagtgattctcctgcctcagactccagagtagctggtagtaca
ggcatgtgccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccat
gttggccaggctggtcttgaactcctgacctcaagtgatccgcccgcctcggcctcccaa
agggctgggatgatgggtgagccatggtgcccagccgagaatgtccttcaaaaaaataca
tttcaattcagacatttatggcaccccaaagcaattcaagtcccttcagcacagatgggg
tagggcatgtgggctcgggccactcacaccccaccccgcctcctcctggcgtggggaggc
ctgactctgcccacctttactcatgagcccaccgtttgaccagcgaactctctgaggagg
cccatgtgctaggtttgggggctgaggcatttctgtgctcttctctggttcagtctccct
cccaaggtgaaaaacagcctggaaaaccaagtagaaagtgttgcagcagtatgtacttct
gtgccctaaagagcaaaattgttacacaaattgctttgagattccttagaagtgaaagct
ttctctttgcttagcaggagccggtggcccttactttctctcaactttccatgtgttcca
gaaattccagccctatccccttagaggggctgtcatccaggaaggtgatttcatttttct
tttagagagacagggtcttgctgtgttgcccaggctcgactctgaacttaggggctcaag
tgatccttctgcctcagcctcccaagtagctgggactacatgcctagcccagggtgattt
tttttctctgtgttctttctgagctgacaccagctacttgaagaaatgtgccattggccg
agcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggtaggcggatcact
tgaggtcaagagttcaagaccagcctggctaacatggtgaaacccatctctactaaaaat
acaaaaattagccgggtgtggtggtgcaggcctgtgatcctagctactcaggaggctgag
gcaggagaatcacttgaacccaggaggtggagggtgcagtgagccaggatcacgccactg
cactccagcctgggagacagagcgagaccccgtctcaaaaaaaagaagtgtgccgttgaa
aatgaggtttgttcagtactgatcgtggggaaccctttctcctgagataactgtaagagc
cttgtgtcctgagaggccctggagctattcttggggaattgaggtgggcagagattggca
gcccctgggacctgcttggctccaggcgatctgacagcagggaggattgcgaagtacaga
tctgtagacggggcgtggttttcaaaaccatccgtggaggctcttcctaatcttcagttc
ttcacagctgccaaggaaaatgtcatttagcttatgtggttgcaagagactgaagttgaa
cttcagagcacacccaccacctctgccctcacttccagccggagccctgtcctgctctgt
gcctgccgtgcccctctccttgcccttttccattcggccctgcaccctgccggtccctta
aagctgtggctctgtgtgctcattttgctccctttgctttttgtccacgggatacaggga
ggagttattctcgtgctgtatataaactgaatttcaagcagattaaatgaataaacacat
tttttaaagaaccaaaagaaaattaagagaatatttttataattgtggagtgagagaaga
ggcccaagaagtcatgaaggataaaaaaaaattagaggttaaacaatgtaaaaatgaaaa
acctctgtcagaaaaagcaccatgaacaaaggtaaaaggtatatgcagactgggaggaaa
tgtttacaacatataaaccaccattaaaatggccacagtgtataaaagataagaaagaga
caaacaacccaagagaaaaacaggaaaaggacaccctgtctcctgtgtctttagaatccc
ataaacacgtgaattgcttgtcctggtggaagcgatgttcccaatgttcctgtgagttat
gaggattatgcagcctccatctggagctgtttacgaaaaggcctgttggctgccatctgt
cgatgagttaaaattcctacctgtgggatgtgggggtggggggctgagggccttgggggc
actgccaaccccacagttattacactgaactgctgaggcaacgggtttcatatgcagagg
cccaaggccaagggcttgagtgtggctttgctggtttttagccatgtaaaattgagggtg
tcggcgcttgtccacctcaggttgttcatttgtgaaacggagctcaagatagaagcttcc
gttgctgggtgcagtggttcacacctgcaatcccaacaacttgggaggccgaggtggggg
gatctcttgaggccagaagttcaagaccaccctgggcaacatagtgagaccctgtctcta
caaaatattttcttaaaaattagttggttggctaggggcagtggctcatgcctgtaatcc
tggcactttgggtggcTGAGGCAGGGTGGATAACTT
Primer
(+)CTGGTTAGTGCCCCACAGAT
(+)AAGTTATCCACCCTGCCTCA


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