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Mouse element [ mm2178 ]


Position: chr13:14,737,874-14,743,277 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCTTCAGCTTGTTGACCTTTTTgagttctgtggactctatcttaggtattctgtactttt
tttgttgttgttgttctttttggctaatatccacttattagtgagtacataccatgcatg
ttcttttgggtctgagttacctaattcaggatgatattttctagttccattcatttgcct
gtaaaactaagggtgtcctcattctttttttttttttaaattggatattttctttattta
catttcaaatattattccttttccagtttccccccctcttgggaacccccatcaaatcac
ccctcctcctgcttcaatgagggtatttctctacccacacacccactcttgcctccccca
ccctcaattctcccatactggggcatctatcaagacttcataggaccaaggacctctcct
cccattgatgcctgaaaagtccatgctctgctgtatatgcagctggagccatgtgtactc
cctggttggtggcttagttcctgggagctatgggggtggggtgggggttctggttggttg
atatagttgttcttcttatggggttataaacaccttcagcccctttagtcctttctctaa
ctcctctactggggaccccaccctcagtcaaatggttggctacatgtatgtgggctttgt
aatgtttatgttgttattgaaggccagccttagtccatggtgaactgttaggatgcatgg
gattatttcagtcttcttatatatgttgaggcctgttttgtgaccaattatatggtcaat
tttggagaaggtagaatgaggtcctgagaagaaggtatattcttttgttttagggtgaaa
tgttctgtagatatctgttaaatccatttggttcatgacttctgttagtttcactgtgtc
tctgtttagcttttgtttccatgatctgtccattgatgagaatggggtgttgaagtctcc
cactattattgcgtgaggtgcaatgtgtgttttgagctttagtaaagtttcttttatgaa
tggggtgcccattaagagcataggtgttcagaattgagagttcttcttggtagatttttc
cttttatgagtatgaagtgtccttccttatcctttttgataacttgggttgtaagttgaa
tttattcaatatcagaatgtctactctagcttgtttcttgggaccattttcttggagagc
tgttttccagccttttactcgaggtagtgtctacttttgtccctgaggagggtttcctgt
atacagcaaaatgttgggtcctgtttatgcatccagtctgttagtctatgtctttcattg
gggaattgagtccattgatattaagaaatattaaggaaaaatgattgtcgcttcctgtta
tttttgttgttagatgtggaattatgtttctgtggttatcttctttttggttcattaaaa
gaagattattttcttgatttttttttttagggtgtaatttccttccttgtgttggagttt
tccattcattgccctttgaagggttggatttgtggaaagatattgtgtaaattggttttg
tcatggaatatcttggtttctccacctaaagtagttgagagttttgctgaatatagtaga
atgggctgacatttgtgccctcttagggtttgtataacatctgcctaggatcttctggct
ttatagtctctggtgagaaatctggtgtaattccgataggtctgcctttatatgttactt
gacatttttcccttactgcttttaatattctttctttgttttgttcatttggtgttttta
ctattatgtgacaggaggaatttcttttctggtacagtctatttggagtcctgtaggctt
cttgtatgttcatgggcatctttttctttaggttagggaagttttcttctataattttgt
tgaagatatttactggccctttatgttgggaatctttgttctcttctatacctgttatcc
ttaggtttggtcttctcattgtttcctgggtttcctggatgttttgggttaggacctttt
tgcattttgcattttctttgaatgttgtttcaatgttttctatggtatcttctgtacctg
agattctctcttctatttcttgtattctactggtgatgcttccatttatgactcttgacc
tctttcctaggttttctatctccagagttgtctccctgtatgttttctttattgtttcta
cttccatttttagatcctggatgcttatgttcaattccttcacctgtatgcttgtgtttt
cttgtaattctttaagggatttttgtgttttctctttaagggcttctagcgtttacctgt
gttctcctgtatttctttaagggagttatttatgtccttcttaaaatcccctatcagcat
catgagatatgatttttaaacccaaatcttgcttttccattgtgttggtgtacccaggac
ttgctgtggtgggagaactgggttctgattataccaagtagctttggtttctgttgggga
ggttcttgtgcttgccttttgccatctagttatgtctggtgttagctggtcttgctgtct
ctgactggagcttgtccctcctgtggacctgtcattctatgtcagcacttctggcaagac
cagggtttggttgtggagatctgtggaacagccttagctcctgggtgcagatggagactg
gaaggatcctattcctgtgccctgtgcacacctggctggtcccactttagacagttattg
gaatgaaaatggagatctcacctctgagcttaggagtgagagcactcctgaaagaccagc
tctctcctggtggaacctgtgtacaaagggctgtggaacagccttagctcctgggtgcag
atggggaccagaaggatcccaatctggcttttattcctttcgttcattgtcacctactgt
agtggttgtatgtgtgtcactgagtctatatctatcctcatgaattctgcaatttgacaa
atataatgtataaaaccatgagcataatttattcattcactttggagacactgttattga
ggattacttggttggttgttattcttttttaaaatgatgtcttgggaaatttattcttta
ttatcattaagaaagaaggatttagttaacctgtgagtgtgagattcagccatgaatggt
cttgaaaaacactagacatttggaattagccacttttgtagttagaaaccttcttcttag
aattggaaacaatcacccatggaaggagttacagagacaaagtttggagctgagacaaaa
ggatggaccatctagagactgccatatccagggatccatcccataatcagcctccaaacg
atgacaccattgcatacactagcaagcgtttgctgaaaggaccctgatatagctgtctct
agtgagactaggccggggcctagcaaacacagaagtggatgctcacagtcaactattgga
tgggtcacacggcccccaatggaggagctagagaaagtacccaaggagctaaagggatct
gcaaccctgtaggtgcaacaacattatgaactaaccagtaccccggagctcttgactcta
gctgcatatgtatcaaaagatggcctagttggccatcactggaaagagaggtccattgga
cacacaaactttatatgccccagtacagaggaatgccagggccaagaagtgggaatgggt
gggtaggggagtggggggagggtatgggggacttttgggatagcaatggaaatgtaattg
agaaaaatacgtaataaaaaaaatatttaaaaaaaaaaaaagaaaccttatctttgtctt
aacctacactgaccacatgggggtgctctaagccttccatatatagtagtagtatgaata
catgtttctccctagcatgtattatagcatttatgccagagtcattgcttcatttttgcc
aatagccctattttaacagcatcaccaaagctggttgtctgaggtagagcttgtcactaa
aatctctgtcaatttagagtaggggaacattgcaagattatcttgtgaaaactgtaactg
gttatctttataactaaagaaaagaccaaatttgcaaaaatttaaaaaagccatgaatgt
tgtatgttctattttacaacatcagttaatatagttgctttattagggcaatctgttttt
ctaggtccccttcttgcccaggatctaaggagctgttgtttttcttttgaacattctctg
tcctttatgtatatgtgtgttttgtctgcatgtttgtctgtgtatatcattggtgcctga
tacccttggagatcagaagatgtcagatctctagtaactggagttatagatggctatgag
ccaccacatgagtgctgcaaatggaaactgggccctctgaaagaatagcttacgttctta
accactgagccatctcttcagcctgaacttttagagggttttgagtactttgatttttta
aaaattgatgagaatttcaactgtctacagagaaaatgcttcagagaatctgcttattca
tgtacaccatcaacaatattactcaagtatataatatgttcaagaataggtcttactgac
aagttctggagggtaactaacagtattatagtcaataccctgattgtttgggggtgggat
tctatggaaccctatttgccaacaatccagaaatagttaatcctttcctagcactaggct
ttttatttagtagtgtacaaggcctaattgtgtatttttatttatttatttatttctatt
ggttatttaattctttatattttaaatgttattcccctttctggtttcccctctgaaaac
ctctgtcccatcccccctgcccctgcttctatgaaagtgctcccctacccatacacccac
tcctgcctcactgccctagcattcccctatgctggggcatcaagcctccacaggaccaag
ggcttccccttgagttgatgccagataaggcaattacatatgcagctggagccatgggtc
cctccatgtgtacgtcttggatgatggcttagtccctgggagctctggggggggggtggt
ctggctggttgatattgttgttcttcctatggggttagaaaccccttcaactccttcagt
cctttctctaactcctccattggggaccctgtgctcagtctaaaggttgcctgtgagtat
ttccatctgtattggctaggctctggcagagcatctcaggggacagctataccaggctcc
tgtcagcaagtgcttcttggcattagcaatagtgtctgggtttggtgtttgcacatggga
ttggttcctgggtggggtggtctctggatggcctttccttcaGTCTTTGCTCCACTCTTG
GTTC
Primer
(+)CCTTCAGCTTGTTGACCTTTTT
(+)GAACCAAGAGTGGAGCAAAGAC


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