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Human element [ hs2176 ]


Position: chr3:38,602,635-38,607,552 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SCN5A(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAGCTGGTGTGGACTGTGTGgtgtgggccagatgccaggttgggggatgctgttccccag
caggcacgctgaaccctggaacagggtggaaaacccagctcttaggacaccaaacatctg
ggtgtagagtgaggtggggaagccctgggagtttgcccttggctggctctgtggccaatg
gccaccgcagaggcattcctggcacctagtgtctcattgcgtccctctggaatcaaatgt
ccttgctcccaaagagacatttaactctgaacattatcttgtggatggtttcccaccagg
aataagctatgtgtgtctccatggattggcggtgtgggcaaggttcaaagccatcaacca
actggtaggctgagctgtgtgatggtgcctgctgggtcagtgagagacaaacaaacatgt
cttctgaagccacacagaactggtatgttttgttaaaaaaaatatcccacgcaagtaaac
acaaacacacacatgtgtatttgttttcttgctatatatcacggctgatgtttttcttgg
tgcgctttcaagtctgccttatctgctctcattctttggtaaaatgtggtgacttgaaaa
atgcatagggatctgcactaggaaaatggtgcacaggagatcactaagcacgtggttatt
tcctctacagcctctgtctgatgctgggaatgcagcttgctctatgcctcttccctcacc
ctcccgaccacagcccctgtctgatgctgggaatgcagcttgctctatgcctcttccctc
accctcccgaccacagccccactggccatcacagacagagggctggcagcctgtgtctgc
caggaggcagggcatgcagaggggcacacagagtgggcacacagagtgggcacacagaga
tgcagccctgcaggacagcagaagcacaggggccctggtgccagtggcctggggtgtagc
tgagacccctgtgcccagcaagtcttgcttcctctcctttgtccggtgctctcccagccc
tcatgggagctcacagggcttgagggtgagccctggaggtgggttctcacagctgcctag
cctcagggtgcctccatgcccagctgtgcctctcctggaggttctgggccatgctcctac
caagtcagcctcggccacagtctccacggccataggacatcagaagcacagggaggggtc
ctgggtggcagtgggctgggcctgtgggaccgcctcccactccctggtgggaaggcagcc
acctctcttaccctcatgccctcaaatcgtgacagagctctcagaggacggagtgcacgc
agcgtccgcagtgacttgatggggcccatctcggcaaagcccagggtgttggccaccagg
ctgaccagagagacctgggggaggcaaagtagaaatggggaggatgggaacagctcccca
ctgttggggacagacagtaggccttctggtcccactaagacggtgctgggtgcgagagag
ccacaggcctcctgtgtccactctttattagtcctggggtggactgtcatcacaggccag
ctctgcactgggccaggcttcccagagcccaagctggggcaagcccaagagtatcctggc
ttctgggcctttactgagaggctgctatgtgtacttcacatacatgctctgtaataaccc
tactaaccctgcgatgttgcgatgcgccacctctattctacagatgggaaaactgaattc
caaagccactctgctggtatggcagagcagggacacaaagcctgggcttttggtctccac
attctttccttcaattccaattcttggacctgtctccttcgccaaagaagccttttttgg
ggaagaagaggcagtcctgggttaagtaggagcaaatagacaatcgtggggcgtttcccc
aaggccagactgtgcagcatttcaacatcttcaaagaagatggggactgggtggcaccag
gagcctcagctctctgttccctctgccccagcccctgagggcacttccactctgtggatt
ttatccttctaaagctccatgggcatccactcccttcttacttcaccgctggcctgtgat
cacaggccaaaaatggcctgctgcctgacctcccctgcagtcaccattagcaccacccgg
gtgctcaggccagcctggggttcggagaggctgggggcagaggcctgactcccacagcct
cctcccgggcttggcagcaccaggggagggagctgagcaaagaggccaggggaaggaaga
cacgccagactgatttctgtgttgcccccactcacccctcaaggatgctgggctattggc
ccccaatcctggagagtcggggggcatctctcagggacctctccttgagggcaggacctc
cagagtgccaggtccagctggtctgcctgcccagttcctaataggctgccttgcggtctc
tgttctttccaaagcttgccccgtctgccccggcgatggcttcccatctcaggtgacggc
aactccatccctccagctgtgcaggccacaattcttggcgtcctccctgcctcctctctg
tctctgacaccctgtgtctaacccatcaggatttcctgttggctctgccttcaaaataca
tctgaagtccaagtgtttctcaccacttctactgccaccgtcctggcccggccaccatcg
tctctcactggatcatggcctgagcctcctaactcttctccctgcttctattcatccctc
tctaccccggcctccatgaccgagtgactccctaaagaaaatcagtcagttcacggcact
cttctgttcagagccttccaattccgcccccctacccccatttcattctaaatcaaaggc
catattttttcaaaggcagcaatctggctgcatcccctgcaatctggcctcatctcctgc
gcttccttctgctcagtggctctagcctccctgcatttcccccagtatgccaggcatgct
cccgacacacggtccttgcactgctcttccaatctctgcttggaacgtctgccagacatt
ggcctggctaaccccaacttcaaacccgctcaaatgtgaccaaagtgcgcctactctgat
catcctatttaaaagtggtaacctgcaccttcccctccaccccaccccttcccttcccaa
gttctctttgctccatggtagataccactttttcacataatgtaaaagtggcttattgat
tatgctgattgtttgtagccaccttcctccatgtggggaagagtttttattttgttccct
aagatccccagcaccataacagtacttgcacacagtagagacccaactgcatttattgaa
aaataatgcagaattcatcttggaaacatccttccctagactctgaggcctgagacaaac
tttcccatgaagcatgcggatggggtaggggcacagcagcgtggccagtgccaagaaagc
tggattccacacccacttccttctgctcagccttgggcaaggcccctccctgctgtgagc
cttggttgccttctccacaggctccttctctcttgggcctgagcagggaagcactgccga
ttccctttcccttgccttggctctgagctccccaaggtggccagcggctggtgggtgggt
ttccccagaagtctgcgcagagtccctctggcttgccttgtgggagaccctcagcaggcc
caactgcccaagatgctgcaggaacagcgggtcagggatcctcagggctgagctgccagg
atcccaggccctcccacagtccctcaatggggaggcctcaggggcctctccttcatctca
gggaggctctgagggctgggccaggcagtccagtgtgtctagagctctccttgcccccct
tccaccccagcaccccctcaccccagcattagcatcctcttggccacctggggtgatagg
aagaggcctggactgcaggtccaaggacctggatctgcgtctctgtgcatcccctctagc
ccaaggcgctctgccaccatggccacccacagtttgacctcccacccagccttggtagct
tcaacctggactctggccaggcttactgggggctgagcctctgagtggggtatggagact
gcacaggcctgagcctgttctgtaaccacaggaaggatagctcctgctggtatgcagaac
ccgatgtcaaggctggaagccatcagcaaacccggcgccttctggaaagcccttttcagt
ctgcagatcctgacccctactctgttttgttcgatcccctagagaggtccctccacctgc
accctttgccttcgcttcctttgtcctcagtgagtgcaaacccaggcctgccctgcaccg
acccgtttctctctgcttggctactctccctcttgactgacgtcaggccccctgtcagac
ccctcattcatgctgcctggcacccaaatgtgtcttggggcctgggtagctgtggggcag
gggcttcacactccatctgccaaccgggtgttcagaagccatgctgacctcctgccccag
gccctccttggacatagcctgggcaggcagccctcacagctacctgatcatctagggcag
caacccagagcccctgagccagtgttcatggcttcctcctcctctggggtgactccaccc
ctgtctcatcctccccagtcagtaccttctccctgagctggaggctctcccctgcctgcc
cagcatcccttcagtagccttctccccctggcatgtgtgcatggaggctctgaactgtcc
tcctcgtgtgtgcatggaggctctgaaatgaccatctgtctagtgggcctgatggacact
tacagtctgctgtggtgtgtgctagagcacaagcttgtCTGCTCACTTCCCTTTCTGG
Primer
(+)AAGCTGGTGTGGACTGTGTG
(+)CCAGAAAGGGAAGTGAGCAG


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