Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2175 ]


Position: chr21:35,817,695-35,821,340 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C21orf140 - RCAN1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CACCCTAGCCCTGAGTCTGTttatgcttctgtcaggtgtggcatgggcctgcctgggagc
tattctttttctgtaaagcacaggcagttaatcagtggtctctgggaagaatccagctca
gggttatatttcgtttgacccactcaagttttaaaaagtaaattagttgccaatgtgcaa
acattagaagagttcacagcttctccaacaatacctagaagttcatccgatggtgcccgc
attccctgctctgtctagatggtgcccacattccctgctctgtctagatggtgccgacat
accctgatctgtccagacagtgcctacattccctgctccatctggatggtgcccacattc
cctgctctgtccagacggtgcccacattccctgctctgtctggacggtgcccacattccc
tgatctgtccggacagtgcccacattccctcctccgtccggaaggtgcccacattccctg
ctgtgtctggacggtgcccacatttcctgctccgtccagacagtgcccacattccctgct
gtgtctagatggtgcccacattccctgctccgtccagacagtgcccacattccctgctct
gtctagatggtgcccacattccctgctccgtccggacggtgcccacattccctgctccat
ccggacggtgcccacattccctgctccgtccggacggtgcccacattccctgctccgtcc
ggacggtgcccacattccctgctctgtccagatggtgcccacattccctgctccatctgg
acggtgcccacattccctcctctgtctagacagtgcccacattccctgctccgtccggac
ggtgcccacattccctgctctgtctggacggtgctcacattccctgctctgtctagacag
tgcccacattccctgctccatccagacggtgcccatactccctgctctgtctagatggtg
tccacattccctgctccgtctagactgtgcccatattcgctgctggctgcaaatgcgagg
agttgacagcagcctcccctttacaaggcaggaggtgccactgttcgccattgtctccac
ctagggcttcacttgctttctatctgcagacatcagagggacccacatctctctgttctg
acacgctgtgtgttgatggcagagtttaattatccacatgcaatcttactttccttattc
ccaagtccgtggggctgcctcatcaaagcattgtaagaactgataaccatcttctagaag
tatcatagtgatattaagaacacacatcacagatcatagtaaatggctttaattttttag
cgaaatctcactactgcaaatgcattgttgtcctagctaatgaatgcatagagtattgcc
tgcaaaataataattgagattctatttttaagaagcttagaacagtacatggtgcatagc
aaagactctgtgtatgtgaagccagattttaaaatatggtaacaagtgtctgaaaatatg
tggctcaatttgtctcccggttacttttccctctccccctttaaaatgtagaggaaggag
aagaagagataagaggtttgtgagtgaagacaagggccctttaaggcctgggaagactaa
cgccatagggatctccctctgccttaaaaggcacaggaatcttagtggggaaaaagaagt
ggtgataaatagccagtccgtgtgcctggaatatcaaagtcagtgcgtgccagggatcac
actgcgggtcacgtgcactctgggtctctctctgcaaacctgccctgcctcagtctggga
atatgcaactgcctaagaagggtctggcttacacaggggccatgagacgtggcaggcata
gctgggctgctactggtcatgaatcctggacacggcaggcaaggtgtggtgtccatatgc
attattcgggtggggcaaagatcacagctctcactagactttcagaggactttgtaaccc
aaagaaccactcatctcaaggactgtggtaactcaggggctgagccatgccagtgtttat
tatgtgaaacaaggactggaacctcacaagaccaagtctgtccatttgaggatggcccaa
gatgcacacgggctgcttttatcttatgcgcaggttttaaaaaaatatgtttcatttaaa
tattccatactcttcaggaatgcccaggcagctgagctttcaggatgtcgcattgcagag
gactccaatgctacatatggcagctggagaccctttcaaggcaggtggcagaacggaggc
cctctctatctgctggggcagccctccgggtgccccgctggaaggcagagcagctccatc
tctgggtgggtgagaggtgctgcatgggctcactatagtatcccaatactgtatggcagt
aggctgccagagtatcctaagctgggtggcttcaacaacaggtactgactcacagttctg
gaggccaaaagtttgaattcaagcagggctgtgcttcctctgaaacctgtgggagaggag
ccttcctggcttcttcccgacttcttgggatggggatgcgcatccatcctcggccttcct
tggtttgtggctgtgtcactgcaccctctgcctctgtcacggcatggtgtcctccctatg
catctgtgtctgaatttccctcttccgataaggactccagtcatattgggtgagggccca
ccccaatgacctcatctcaactagatcatctgcaaagactctatttcccaattaggtcac
attgaaggtacctgtctttttgggggatacaattcatctcacaaaaccggcccatcacct
caaaaggacctgccaccccagtgctatgtgtccctctctgcccagagccactccttcccc
tggctctcggggagtgggggcacctttccctgctcccacagtgaccgagcaccttcccct
tggtatgcattctgaagggggcatttttttctcctccatctcagccctgtacaaagcaag
ttctttctagattgaggtgtgtatgtgtgtctatgtatatgagtgtatgtgcctgtgtgt
tttcagggagatgtgtgcaggatgggtgcaagggaggagtggaaggcggaagggcaggag
gaggatagagccacaagagtgagcacagaagtgacaagggcagaatcagtgtgtgcttgt
gacaagtatggaaatgtcatgcctttaggttcagtcctataaggtaggtgtatcagtaag
ggcattgattctgcgaccttaacagagatcagaataacagtggcttaaggaagagtggag
tggatttctctctcctgtaaatctggcctggtgggtggtaaggaggatccacgtcgccca
ggcccagatgtgtgtggctctttgagtgccccgttctttcccagtctcataactgctctc
cacctcctccacatccagccactgggaagcaggacaaagttagttaagggcacgttcttt
tctttccaaggattacttggacattacagtcttcacttccatgcctactggccagggctt
agtcacacaaccttgctagctgcaagggagtctgggaaatgcagctgctattctcagagg
ccatgtcctcagggattctgctaaatTTAGCAAGGCAGGGACAGAT
Primer
(+)CACCCTAGCCCTGAGTCTGT
(+)ATCTGTCCCTGCCTTGCTAA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.