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Mouse element [ mm2174 ]


Position: chr13:14,855,687-14,861,144 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATTTCCCCTCTCATGGGACTACtgtattgacaaggctagttcttctcctaaggaaatgta
ttccttttcatttgtttgtttggtgtttttccttttatagaaaatagaatttggatcttg
gtccgagacccgccgaaattaggaaattagtctgaacaggtgagagggtgcgccagagaa
cctgacagcttctggaacaggcagaagcacagaggcgctgaggcagcaccctgtgtgggc
cggggacagccggccaccttccggaccggaggacaggtgcccacccggcaggggaggcgg
cctaagccacagcagcagcggtcgccatcttggtcccgggactccaaggaacttaggaat
ttagtctgcttaggtgagagtctgtaccacctgggaactgccaaagcaacacagtgtctg
agaaaggtcctgttttgggccttcttcttcggccaggaggaggtccaaatacaagatatc
tgcgcaccttccctgtaagagagcttgccagcagagagtgctctgagcactgaaactcag
aggagagaatctgtctcccaggtctgctgatagacggtaacagaatcaccagaagaacaa
tctctaaacagagtcaactataactactaactccagagattaccagatggcgaaaggtaa
acggaggaatcttactaacaggaaccaagaccactcaccatcaccagaacccagcacacc
cacttcgtccagtccagggaaccccaacacacctgagaacctagacctagatttaaaagc
atatctcatgatgatggtagaggacatcaagaaggactttaataaatcacttaaagaaat
acaggagaacactgctaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaa
acaggtagaagtccttacagaaaaagaggaaaaaacatacaaacaggtgatggaaatgaa
caaaaccatactagacctaaaaagggaagtagacactataaagaaaactcaaagcgaggc
aacactagagatagaaaccctaggaaagaaatctggaaccatagatttgagcatcagcaa
cagaatacaagagatggaagagagaatctcaggtgcagaagattccatagagaacatcgg
cacaacaatcaaagaaaatggaaaatgcaaaaagatcctaactcaaaatatccaggaaat
ccaggacacaataagaagaccaaacgtacggataataggagtggatgagaatgaagattt
tcaactcaaaggttcagcaaacatcttcaacaaaattattgaagaaaacttcccaaatct
aaagaatgagatgcatatgaacatacaagaagcctacagaactccaaatagactggacca
gaaaagaaattcctcccgacacataataatcagaacatcaaatgcactaaataaagatag
aatactaaaagcagtaagggaaaaaggtcaagtaacatataaaggcaagcctatcagaat
tacaccagatttttcaccagagactatgaaagccagaagagcctggacagatgttataca
gatactaagagaacacaaactgcagcccaggctactatacccagccaaactctcaattat
catagagggagaaaccaaagtattccacgacaaaaccaaattcacgcattatatctccac
gaatccagcccttcaaaggataataacagaaaaaaaccaatacaagaacgggaacaacgc
cctagaaaaaacaagaaggtaatccctcaacaaacctaaaagaagacagccacaagaaca
gaatgccacctttaacaactaaaataacaggaagcaacaattacttttccttaatatctc
ttaacatcaatggtctcaactcgccaataaaaagacatagactaacaaactggctacaca
aacaagacccaacattttgctgcttacaggaaactcatctcagagaaaaagatagacact
acctcagaatgaaaggctggaaaacaattttccaagcaaatggtatgaagaaacaagcag
gagtagccatctaaatatctgataagattgacttccaacccaaagtcatcaaaaaagaca
aggagggacacttcattctcatcaaaggtaaaatcctccaagaggaactctcaattctga
atatctatgctccaaatacaagagcagccacattcactaaagaaactttagtaaagctca
aagcacacattgcgcctcacacaataatagtgggagacttcaacacaccactttcaccaa
tggacagatcatggaaacagaaactaaacagggacacactgaaactaacagaagtgatga
aacaaatggatctgacagatatctacagaacattttaccctaaaacaaaaggatatacct
tcttctcagcacctcatggtaccttctccaaaattgaccacataataggtcacaaatcag
gcctcaacagattcaaaaatattgaaattgtcccatgtatcctatcagatcacaatgcac
taaggctgatcttcaataacaaaataaataacagaaagccaacattcacatggaaactga
acaacactcttctcaatgataccttggtcaaggaaggaataaagaaagaaattaaagact
ttttagagtttaatgaaaatgaagccacaacgtacccaaacctttgggacacaatgaaag
catttctaagagggaaactcatagctatgagtgccttcaagaaaaaacgggagagagcac
atactagcagcttgacaacacatctaaaagctctagaaaaaaaggaagcaaattcaccca
agaggagtagacggcaggaaataatcaaactcaggggtgaaatcaaccaagtggaaacaa
gaagaactattcaaagaattaaccaaacgaggagttggttctttgagaaaatcaacaaga
tagataaacccttagctagactcactaaagggcacagggacaaaatcctaattaacaaaa
tcagaaatgaaaagggagacataacaacagatcctgaagaaatccaaaacaccatcagat
ccttctacaaaaggctatactcaacaaaactggaaaacctggacgaaatggacaaatttc
tggacagataccaggtaccaaagttgaatcaggatcaagttgaccttctaaacagtccca
tatcccctaaagaaatagaagcagttattaatagtctcccagccaaaaaaagcccaggac
cagacgggtttagtgcagagttctatcagaccttcaaagaagatctaactccagttctgc
acaaactttttcacaagatagaagtagaaggtactctacccaactcattttatgaagcca
ctattactctgatacctaaaccacagaaagatccaacaaagatagagaacttcagaccaa
tttctcttatgaacatcgatgcaaaaatccttaataaaattctcgctaaccgaatccaag
aacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggat
ggtttaatatatgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaa
accacatgatcatctggttagatgcagaaaaagcatttgacaagatccaacacccattca
tgataaaagttctggaaagatcaggaattcaaggccaatacctaaacatgataaaagcaa
tctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccac
taaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttg
aagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaag
aggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaa
attccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaa
ttaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaa
ttagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactc
taacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaatta
aagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattg
taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattc
caactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaa
aaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgc
ctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagag
acagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatg
gtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttca
acaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatact
tatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagaga
cactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaa
aattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacc
taatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccac
caacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaaca
tatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggg
gctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctga
aaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattcc
acctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgag
gatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccac
tctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccag
caatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgct
ccactatgttcatagcagccttatttataatagccaGAAACTGGAAAGAACCCAGATG
Primer
(+)ATTTCCCCTCTCATGGGACTAC
(+)CATCTGGGTTCTTTCCAGTTTC


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