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Human element [ hs2172 ]


Position: chr2:71,839,666-71,844,519 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: DYSF(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTGGGGATTATCTGCGGTTtatagtcattttctgctctttgggcttgacctggagactt
cccagagggggattcaggccagtgcgttcttcctcctccacccagatgctgcccagggag
gagctctactgcccccccatcaccgtcaaggtcatcgataaccgccagtttggccgccgg
cctgtggtgggccagtgtaccatccgctccctggagagcttcctgtgtgacccctactcg
gcggagagtccatccccacagggtggcccaggtaggggaaggggagatgatgggcaggtc
agggaagggggagcctcagggccaagctacccttcctagttgagatgcatcctgaaaccc
ttctcttacggagacctgaatgagaagtggtttctgctctgctagaccacagggtggaga
ccttccttagggcagagcctagctctgggtggggggcaccaggagcaggtgactgatacc
cgttggagctgaggggtgagggctcaaagtgggcccagggggagggagagagagggcagg
gagacaatgatgcggggagggaggaaagaaatgtgaggagaggaagacagaagtgggaga
cagagcatgtgaaggaggatgggagagatggagatgagagagggacttattgggaagtag
gaagagagagataccgactgagaaatgtggagagactgcagggtcttgtcttggtccctt
ggttgagccctggggctggtgaggggcgagccttttgagagagcccctctcaggcctgga
tggctccctcccctgcagacgatgtgagcctactcagtcctggggaagacgtgctcatcg
acattgatgacaaggagcccctcatccccatccaggtaggatgggcatcctccagggagg
cctgggtcacctttcccctccattcctcatcaattcccaccccttctcccctacccttca
ttatcacacagcctctatacacatccccttctgggctctgcggttggacactgtccagta
gagagacccagatgggagctttcagtctggctgaggggggtggggtgtgctcatctgggc
aagactcaatcccttttcttggatgcatatgtgaaaaataggccatctaccctgggggcc
atggtgagggctttctcctggagatcaccagaaaatcagggtgaggagcaaatgagagaa
ggacgacaggggagggagtgagtgggccatctctggggtcctccagccccatctccctat
ctgggacaggccccttcttagggggaaggttgttctgtgggcttgtgcttggtggctcct
tggagacagcttagaaagaagaggctgtgtccaagccaagagtctatctcgccccattcc
tccatctgcagggaaaaggaggaaggaggcagggaggggccttattctaaggtctccagc
cctgggggaggtaggagtcttccttttgctgcatactcagcaactgagggccagcctgtg
atgcagatgccaatgccacagagcatggcaggaggtctgtggcaccttgtgctgaggggc
agcgctcccccgactgtgggccatggagtggctctggattctgtagggttgagcccatct
ggtccttcccacagtagacatggagaaaggtctcactgtgagcaccagccttgaactcac
catctgttccaggttgtcaccctcctctctgggctttgcaagatactggtcatacccctg
gcaccctggggctcccagaacttctgggccacccagaggcagagcctccaggcctgtata
gacaacacctgtgtcctcgggccttgctgcatctgtagtttcactgatgctaaaagtcct
cagaagccctgtgttccatctctccagcctctgtggctctccagggttctgccctgccag
cctttctgctgggaagacctcctgccccctgtcccttgtccaactcttgatcattgttta
agacttaacttaggcatggtcgcttctttgggggagtctttcctggctcctcttctcctg
tgagacttgcctatctttgggtcactgtgctgctctagggcctgctgtctctgtcaatgt
tagcatattccccaggctaagctcaggggagcaactgcggctccttcctctttgtattct
caatgctcagcacaaggcctcgcttagcggaggtgttaatgaaagtctgtctgtcttggc
aagtgggtagatgggtgcatgggttgatggatggatggacgaattttctggctactgtct
gtatggatctgaggaggaatctctctcttggctggggaaacccaaatggaaatttcagat
gtccctatgtgaaatttagctaaactcagtgctagtgcctctgggctgcttgggtgttta
tagctgaattaggcagataatttgccccaaactctggctgcctgctcctggctcctgttt
cccggctgctccatgggcctgtctgagattgtgcagggaagtgcagggcctgcccagcag
gatttccgttctgtgtgtgctgccctcaaaatgtctacacactcagatggggagggacta
ttttaggtcctgctggccacaagcacagccagaggcagacgatgaggaggcccagcctgg
ccatcctcccggcgttgacatgagggaactggggctgggatctgagccagagctgggcct
gtgctgtttgtgggagcacacggccactctggctagagctgctggccagaccagcagcac
tggtgggagctgggatggggctcctggaggtgtacccacctggggaggggctgggcctcc
cctggcctgggacaggggaggaggaggaaatgacactgatttgctctgatgggggaggct
tggaccttgccctcatggagctccctgtctgatgaaagagacaaaactctgttctcaaaa
gcctcaaacccagcagggagaccagttctgttctgcagggagccctggccctctggggaa
gccccttttctggtatctgactttgttccatgtttttctctgagatctattgctctgatt
tggctgatccaggaaatctttcactcactcgcctctcctccctgtccctggcactctgaa
ggacaggcgctccaaggccaacccaggaggcagctgaccccgggtgcagttccagtggtt
tgctagataactatggctgggctttcttcctctccctccttccccagtgcagatagcatg
aagggccctggcttctggggacaggagggacgagaggtctggcagaatctggattttggc
tggcttctgtctgccccaccggtgtttctcggcagcctgttccatcctcacagttgatgc
agccctggctggtgctggatgtgttcactgtgtcctggctgtggtcctaggacccctcct
agctcaaacctgctcttgccagagttacccttccatcttggtcccttcctgtcactttcc
tccgtgacaccttctctctgctcccaaagccttcttaccagcatctgcctaggtcctggg
atgagctggccacacatttagaacatgtcaccggagacccttgcctgatgttcaggccat
gggctggcactcaccacggagtatttcttaggtttctagaaatgttttggtttgtgtcga
gagtggccaattctggaggtgactcaaaacgtgtataaggcaggtctgtgctcagcatcc
cagggctcgtagatcagtgtctgtctctaagggtaagggtggggggccctgtttaggggg
tgcctggcctgtttaaactgttctccatggtgatgaggattgggatgagaaatactcaca
cgtattaactccaccacttgttcttggtctgtgcagccatcctatgtgtagactttagag
tggcagactaggggtgggggtggtgtgtgcacatgagtgagcatgacaggtgggggtggt
aggagcaggtgtgtgcacgagcttccatgggtgctggccagaggtgtgtctaagcttggt
ggtggcattgcaggaattgtggccttgactttgaactttctgagggcaggcctgggtgtg
tcctcacacagggagagcagaagtgtcctattccatctagttctctgctttagaaaacga
tatattcattttttcagataataaaatgatacgtgttcattatataaaatttggaaaata
tagaaaaataatgaaaaaatagggcttacctccatccaaacacacaatttgaatgcactg
cacccaacatttcattgtcattctttcctcttctttttaggtttctctttctgtctctga
ttctgtctctgacttcatttctacctttaaaataaaattaaggcctttgttcactagttg
ttgttgtttttttattaaggcagttcttggtgttatgattatgattaggggaagaaaaac
agtgttcaggaacacacagagagcctgccaccccctgtccatttcctatagagggtcttg
aagctccaaatagaggctgtgcccccagaaatcgcacctttgaggcactgagatgccccc
agagccagctgggtatggcaagggcggctcttgcttagcattccgagagagcactcctag
gtagaggggctcctcttcaagtcctcagagaaggagaatttcgggaggtgggaatatgtg
agtgttgaagaattagagaaataacttttaggaagttccgactctggtcacaaagagaca
agggatgagggggtgtccagaagatctcaaatgagtgatgtcaaagtgaggagatgtttc
attaacaaggagaccaaactcttggagtctcctgGCCCTGCAAGTTCACCATAG
Primer
(+)TGTGGGGATTATCTGCGGTT
(+)CTATGGTGAACTTGCAGGGC


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