Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2171 ]


Position: chr2:71,728,919-71,733,874 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: DYSF(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTGCCTCTGTTGATGGAGActtggtttgcttacacctcttggctattgtgaataatact
gctgtgaacacaggtgtgcaaatatctaggtccctgatttcaatttttttgggggtatat
aactagaagtggaattgctagatcatatgctaattctaggtttaattttttgagtaactg
ctatgctgtttcccacagtggctgcaccgtttacgtccctacacaccatgcacaagcatt
ccagtttctccatatcctggccaacacttgtgatttttctctccatgactctgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttataatagccatcctaatggatgtg
aagtagtatctcagtgtgagtagtcagttttaaaaatcacctcgttaggtcgaggttgca
gttttatttgatagggtcataaaaatctatattccaatcaatatttgcagagaccagaaa
agggatgagcccagatgacaggtgtgctgttcatccatcaggaaaaagcagttaataagt
acacctgtggctgttcaccagcctaacatggccttgtgccctgacagtaatgttcagggt
aagtccatttctcagggaggcaagcagaagtcacacacagacaccaggcgacaggttcct
acagtcacaggccactcactgcccatggtttcctgctgcctctacagaggggcagactat
atggtgagcccacttcatagcttcctctgctctctttgaagggagcatgtgccaaccatc
gcgctgctgacctactctttcctaatagcccatacatgtgccccacccctcctgtcagtc
agaaatgcagcctctggtgcgtgtggtatggaccgcccagggcctctcaggagtggagcc
tgtttcccctgccccaatatccttttctccctgtccctgaagacaggaaggtttccttgc
ttttcatgtacaatcaatcactgccggcggagccctgggattccaatacagacggcctgt
gtagacatgggtcatatgatctgctggggctcaggggcagtgtgggggtgatgagatact
gacctggtggactgtcaagggctcatgggaagacaacccttcatctctggggaggcgtgg
ctgggcctctggggaggggcaggaaggggtcaaggtggaccttggagaaggaaaggtatc
tcttatcccttcccatgcccaagtatttccctaggggccaggccttccagggatggtgca
tggtggtgactgggtgtgggggtgcaggagagccctcgtggggtgctgggtgactgtgtg
gtctaggcagaccagcctcatctgagtggtggcagtgaggggtctggcagaagagccagg
gtgccttaggctagttttctacatttgacttctctctcctctcaggttcctgggggaagc
caaggtcccactccgagaggtcctcgccacccctagtctgtccgccagcttcaatgcccc
cctgctggacaccaagaagcagcccacaggggtaagtgcccatcagcctctgccaggtta
aggtccaaggcattgccaggtggcttcctctttgggccttgccattctgaccccagacat
gcatctgacttcagctcccttgaagcaggcctggccctccctgaccagagtttgcagtgt
ctggaggggcactggactaggggagatgggaagggcagagggagccctgaccccacctgc
agggctcaagtcagccttggctcgcagcagcttggcctgccccttggtctggtgctgccg
gtctggccacctcctgtccccagcttcctggtcagccttggctatagcccacctagtctc
cctggcagacctcccctcctccctcaccatccagccctcttctccagattcagaatctct
gaaccatctgggtcacagggcatgagggatggagggaaagagccctctcccctgcccacc
aggaccctcttccttttcctccgttgttcttcctgcccctccctggccttctcagtgctc
cccccaagtccaatcagacaattcccagccctcctctctgcctgttatttttagtgagct
aaatataccctgtagggttctctcttcttggtagaattcctgacctctcctgtgggttag
ccccgccttccaggatgtaccaggaaccatggattggaactacttccgccctgtgaggcc
tgggggattcaggccctgacttgtctcagacagggcagtggtactgccccgtggcgggtg
tgtgaggccggggctcctggctggctgggtgagtcaggaagtagccggtctgggcagatc
tctgaatggaacgagactggatgctgagacctagagaaaaggaaccactgaagtcacata
gtcagtggctgttcccatgggggcctggaccaggagctcatcccctagaccctctggtgg
aatggctgtggatggactcctggttcactgaactctcagtctgctgccctctcggtgctg
gactttgctcccaaggggtcttaggctggggatggctgggctgctcccttgatggaagat
gtcacttcccaggaaagtccatctgtttcccacacagggctcactggcagaatgttctgg
tttagagcagtattcactgagcctgtctccatcaccctgagtcccctctcatcctccgtt
tcagcctcctgtctcttaacactccctgtggtcaaggaggaccccaaggagttctggaac
taccccttcaggggtcctgaggaggctcagacccaaccctcaaggcatgggacacagatg
gagggatgataggtatcaaggcagctggcgagagaaagccttggggtcaggcttggttct
cacttccttgctgggacaccagcatctctccactccagctctgtgtgcatccatgactct
ggtgtttcctgcccttcggtcccttccaacctcaaaggcctgtccagccccgaggcagag
ttttccatagctggtccctattcatgagccgtgtcaggctggagccatcccctccatacc
tcccttcgcctcctcctgctccttgttcccacactgtctgggcttcatgtttaccagcgg
ggagcctgctgccttctcttccctggctggggattcctggctgtctgcagagctttacaa
tccttcaccaaccgtgtctccaaaaagagtgtgtgagatccaggaggtggcggatgggag
agagtgctggaccctgctgggttgagccccactagctgagcacaggctggaaatggagtt
ggggagcctcctccctgttgcccaggaggcagtcctcacctgtacagagggtctaggact
agattctagtccatgtgatggcattaaggtcacagtgcagccccagacaggtcatatgtc
cctttgggctggggcttcctgcctgggacctgggctggctgcactgtagtgcgaggcagg
gataactgggggtgtgctgggcagggacagacagccaacaacattgagggttctcgctgg
ccgctcactgagacctcatttctgagctaagcccaatcagcagagcatgccaggtgcccc
catttcattgtagctctcagttgcctctaagggccaaagaacctgctgatggggtgatac
gagtgaacacagagccagtgggatccttaggaaactctggcagactgagaggcgtggggg
aggccgggagtcctgccgcaggctgactgcagaccccgtttgccttttgctcagtgttct
cacccaagtcccttcagatatagcacgctgggctgtgtgccatggaggatctggctatgt
gccaaatctaccctctgacagctgctaggttgatggggaaaacactcccccagtcctgga
ggaacctccaggccatggggatttaggacacacatggaggaaaagaagcagcatcctctc
agatgtattttaagaggagctcactcaggaaggtgtggatacatggagaaaactcagtcg
gcatcacccgggccttaaagccagaatcggatcacaaaggaggacaagagcctacgaagc
ccagtggtgtgtgggtcagggaagccaggagggcactgtgtgttgggagcggggacctga
ggcgggcaggacagtgctcagtgagtccctgagctttcttcaaaggtttggagcttctgc
caaccaaccctgtatcagctcagggccacagctaccctctgcctgcttctggaggttgtc
tgagggagaggttagtgagggccacgcacatatcaggcctgtcttgtccacacgggacac
atgtgttaggggaggtgagagtgggctggtctgggttttggttttgatgagctcagtgtt
ggagagctgtggtcgaggaagtaggtggcgcacaatgggctgggcatggcagggtgggcg
aaggaccccagagcctgaccacataacctggaggagggtcacagccagggagggtctgag
gaggtcattcgccttcagtttcctgagccctcttagcctggggcaagacaggagtctcaa
gttctgctgatctcgttgattgtgggccccaaggcagcagacgagggcgaccgaggttac
cctgctccagggcagcgtgtttggtggacacacgattgactgacaatggccttgtgcgtg
gagaaccctggagtgctgctgagttggagactgaggacctgggctgtcaggcgcgggacc
cgtgacgtggaggaccttgaggaaggtcccactgggagctctaggcccaggttgtgtagt
ccgggagagcacagggctcacatatatcccccaggaagaaaatcttagctctatttgtct
agagaaggagacaggggttgagctgtgatgtcatggtgagggtacaaggtcctggtcctg
ggtggggcccactgacACGCCCACTTTCCCTTAAGA
Primer
(+)tgtgcctctgttgatggaga
(+)TCTTAAGGGAAAGTGGGCGT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.