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Mouse element [ mm2167 ]


Position: chr13:15,235,781-15,241,282 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAGGTACCCAATCACAAAGGAActcacacaatatggactcactgataagtggatattagc
ccagaaacttagaatatccaagatacaagatataatttgcaaaacacatgaaactccaga
agaatgaagaccaaagtgtggacactttgccccttcttagaattgggaacaaaacaccca
tggaaggagttacagagataaagtttagagctgagacaaaaggatggaccatctagagac
tgccatacctggggatccatcccataatcagcctccaaacgctgacaccgttgcatacac
tagcaagattttgctgaaaggacccagatatagctgtcccttgtgaggctatgccggggc
ctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggcgcccca
atggaggagctagagaaagtacccaaggagctaaaggggtctgcaaccctatagatggaa
caacattatgaactaaccagtacccgccagagctcatgtctctagctgcatatgtagcag
aagatggcctatttggccatcagcaggaagagaggcccattggtcttgcaaactttatat
gcttcagtacaggggaacgccatggcctaaatttgggagtgggtgagtagggaagcgggg
gaagggcatgggggacttttgggatagcattggaaatgtaaatgattaaaatacctaata
aaaattaaaaaaaataaatacctgaggtttcttctgaattcacatgcatgttgactcatg
tacatatatacctgcatatatacatgaacatacacaacaacttgtatataaacatacaca
tatatttatgcatgggagaaatgcaagaaactaaaatatattaattttacatgtatatac
aaatatttgcatttacctgtgaaataagccaataaagaggatgactgctacataattcct
ttaatatagcattataatatgttacagagacagtaaacaatttcagaaatgaggggaaga
aagcattaaataagcttaatgcaaagaatttcttaaagtggcaaaaccatcctacacaat
aataatgaatacatgctgtggtggtaaatctcacgtatcaacctgagtagatttagactc
acaatggaaacatgcctctgggtgtgtctatgaggtaaaaggtttatccagagtgaagac
tcactctggatttatgtagacccatccatgggctaggtactagattaaatcagaaggaga
aagcatcaaactttcttttcccagtgtgaatcctcctgaccctgtcctccaaacaacctc
ccccactctccatatttaccccagggccaacatgcagtgtcctagatctagtttgatcac
tacccaaaaataggaggctgcccccatgactcattctgttcttccttacctacatgtctc
tccttcaccatatccaaccttcccagccaattgaatcttgaacaactttctcagagtctt
cctggatgagaatgaggtcttcctattccttccctcttcacatcctaccagatctactgc
caaacttcatgcttgaacgaggatacatatcttgcacacatatcttgcacacaagcccag
tctcctttcccacttaagccctatgcaatctctaggtattagcattttgtctaagctcca
ccccacagttacctggcaacagccaagaatccataaaaggggatgtttgctcccttctct
ctgctcttaccttcctgctcctgctctgtcctctcacccctttccccctctctccccatt
tcctctcctcccttcatgtattcatggtcatcctctacttctctcccctctccccctccc
cgtatccctccctcccctcccctcctctgcctctactaccctcttaattcccctcccatg
ccctgaatacgctctattctatactatactgtcatgtggctggtccctcagggggaaggg
atgcctcagcatgggcccgagatggcagcacccccttcccccatacctgactacccctcc
accaaaacatatttctcctctatttttatttttataaacacatcacatagtgccataact
ctggttcagaaaatatgcaggtttgcatcctccctgctatcacatggaggtccaatgctt
gctagcccaaacttcggaaaacttgtaagtctcctccccgcactggtcaaagtaaatgtc
cgcatagttccaggggagagttcttgagcttggagctacccttgtgctgcccttgaggat
ggagacattcgattttctcactgaccctcattctaggactttttcccttggatgagattt
tcctctctcctttaagacagtttctttctcactgcttagaaaccctcaggcctgggtaaa
ctgctttctgtagctcaagggaaaacagctcagagtgtagtccccaggccccgcatgagg
acctggcggtctggcctgtgctagaaatctctggttattaacagtgccctcaggacgctg
gtaagggcagttaataactctattctcacccatgggtcggtccctacttactgggatgtc
tgggactaattcacagtaagcagaaagcaatatttctacatggccactaaactagcacct
tctagtggtccatagcttaggctccccccgccccctctctcacctcaggagctcaaggcc
cgctgaagctgctaccaggcattctctttctattagctctgctgctatttgctctgctgc
ttgttcactgcataaaaggcaggccttgccctgctccttacatctggctggggattctat
ctgctatgttcacaaacatctgttgcccctaaacttgcgctctcttgagtggggctcttg
cactctgccagccaaggctaacgccaggccctgcctgcctgctcagcttgcagcttcacg
gaaagcagcattggccctgccctatctgccatcgttgtcaccactgcctttttaaacact
ctgggcactattttagttgcttttggatgtcctatttgtgctcactacagctgtgagaaa
aggggggggggtgggtacaggggaatatcgggatagcatttgaaatataaatgaagaaaa
tacctaataaaaaaaattggaaagaaaaaaaaaagaatagcacactcgttactaagacat
gggatgctacttcagactcttcctctccccccacccccacccgcccatcttggactctgc
caggcaggttggggatgcagccgagagccctgcacaggacttcagactactagaaggaag
ctccaccccacctgcccggatccaagctgtgcatgccacagaaccaccgctccctcttga
caccacttctgctgcacctgcagctgttcagcagcactgtggccctgcactccctggggg
tgttacaccccattattgttgcttattacgatctgtgctcttcagagtgtgcatgcattc
cacccgctctccaactggacatgtgcctggtgcctcaatggcacatgcgcacctgcctgt
ctctagctccgctcagaggacctacctgctctcttgacaatctgatttttcagtgatgca
tgcccatgtcaccagcctgttctcatggcctgcctgttcagttggtgtcacaggactgaa
cccgcctgaacaaactcactttctcttaccatgatcttatgccatcgctgccagctttct
tactcctttatatgctggtcctccacaccaactctaagccaagtgtttctctactaatac
aaaggcaaagtgtttctctgctaaagcaaaatgtttttctccacttacactatcgtgcct
tggtaaatgatttttgctattgctcctaaattatagtgtcctatatttatcacatacatt
cttaaatatgtaacttaacaaacacaagttatataattcagatatgaccaactgatatag
ctctcaatcttgtcagaagtctgtatatatatatatgtatattcaagatatatatattca
agatatatatatattcaagatatatatatatatatatatatatatatatatattcaaggt
tataactgacagaatttcccaaagcctaacagtttaccccacaaggtctcagaagatatg
gacacagctacaagagactgcctgaattgtggtatgaaaaccaatgaaaagcatctccat
ggccctgcccgggcttggccaatattgtggatagagagtcaaatgcctcaaattgtctga
gtcaaggtgagacatttcccatttcacacattatctgatccacagagaaaaaaaggggag
cactttgtaaaaaaaaggtcctctgccttctgggcttgaaagccagactgactctgccca
agttgccatggagaccacagagacaacagggaactcttagtggactatagatgaactctg
tcattgtttttaattgatatataactgctaagattacagtttattcttccccagatttct
gactacattgacaactaaggtaactatagcttgacatctagaaaacagagctctactcat
tttcttgcaacagttcaaatgtaagctttcacagatggaatctgttacttccttacctaa
attcagttttcatcaactaaatgcttcatatttccccttcttgctattccactgtcctaa
ttcaagttcttataaatttgcctaaatctaatgaaacattccactatacaatctaactct
ataatcacaaattcttgttcttgctgctccacaaaaagctcatcttaaagaatgttcgcg
ttgttatcacttttataaattactgaaagcccagtcagatctacctctcatggatcaaat
tgctccatccagataaggacatctgctaaacaatattctaaaattcccacttactacctc
ttccagggggtgggattcctcggggttttaaatgtacatctaaggaaaacaattttcttt
ctcctaaatgcacttaatcttattctctaccatgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtttcagcatcttgtcaagtccaggtgcttactatat
ccaggacagctccaaaaatacaacctccagatgctccaatctcctttcacagacacagat
gcttctactggacttgttccttctgatctatccacagacagttccacagaacctggacaa
caaggaaacagctaattctcctcagactagaccaacattcccatacctatttttctcagt
ttcctagagaaatgtcaccacatagccagaaggaagtagttaaagatcacaatgatccta
ttcctgcttcaccatcacttctttctcattttttttcttttttaattaaaccaaacagga
gaatgttagcatttgatcgaagctctgccccacagttacctgggaacagccaggtatgtt
gcaccccacagttacctagcAATAGCCAGATATGCATGGCTT
Primer
(+)gaggtacccaatcacaaaggaa
(+)AAGCCATGCATATCTGGCTATT


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