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Mouse element [ mm2165 ]


Position: chr13:15,226,176-15,232,155 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGCATGCAATGAGAGAGAGAATagcagagtacaatggcaattaatgttaagaattttttc
tagtgagagctgagctgtctgagatctctggagagtgaacacagctcttttagaactttt
ttctaatataatttctgatttcggttggtaaatctatggagagcaaacacagatctttaa
gaatttttctaataggtcagaaaacccaagaattactttgagacctaacatggctctttt
agaataatttgtagcagctatacagaaagaactgctttgagagctaacacagctctttta
gaattttttctggctttctgattttgatcacaaaacccaagacttacttttagaattttt
ctaacagtatttctgacttggtcagcaaatccaagaatgttttatagcagcttttctgac
ttcaatatgaaaacccatgagctatccagagagcttttagagttttttctagcatgagtg
agctatctctagcaggaagttatcttgagcaaactacagagccaagggctatctgcagac
agctgtctagggagccaccctgagcagaacacaggccatcagcgtgtaccatacaatttg
ccttagagttatttgttttactgctctcaaaaaacccttcctcaggaaccctctccaagt
tgaggctggtcctggatacaaaataattttaatttaaggacttacaaaaactttattcac
aatgaccaaatgtgcaggtacagaagagatgagattgtggtagtattaacattgtataac
cctcaaacatactattttagggtgttctccataaatattatgtgtgtatatatatatata
tatatatatatatatatatatatatatatatatatatacatacatatatatatatatgtg
tgtgtgtgtgtgtgtgtgtatgtatgtgtgtgtatacaagcatatatatctatatatatt
tcatataatacatatatatgtatatataatacatatgcattacatataatacaataatat
aagaggacatgtatgaaatgtgaaaatattactacaggattccatttacataaagttcag
gaaatattgttctatgtatgctaattccccactgtcaggttgatagttgtattaggatgc
aaaaattaccaaactatacagtcatttgtctaatttattctgaaataaaaaaacaaagta
aaagataacagcaaagtaattgcatttgtttgggtattggagagttcacctaagagatca
gaaaagcaaagtctctttagctgctttgtttgggttttgctgctggctcctgtagcatct
ttagaggtgtgtgttgtaggattctcatctctttcccaaggaaagggttcttttccttag
aatttccaaaaagacaaattttgggcaaggagactgaaacatagagcaggaaggtatatc
aaatgctccaagcacaaaaataaccttaataacaagggaactatatacactgtgagcatt
ccaggacaaagttggttttcagtgcctgctcctggaattcatggaagagtctcttgaggt
catctcggggactcaatgaagaaaataataccaaatagagaatggtaagaatttgaggat
ttgagtttccagtaatctccttataatgataataatcctcaaagtttttgtttatttgtt
ttttgttgtatgtattctctacctccatggataatacacaaaagtaatctcaaataaaaa
ggtctttaaatggctggaaagtgagtacactggacctgcagagagagtaccacaatatag
taggagggaaactggtctgaaaacgaagcacagacaactttgctgatcatgtcatgtctt
tctctgtctgattctctttatataactagtattttttccccaaagcttccatgcctgcat
atgaatctgtcactcagcatgaccactttgacatgggtggcagagtggccccttccaatc
tatgtgtggctctccatttaaaatagctgttatcattaatggtagttctagttagtatac
ctataaaacaatcctaaccttacaacaatttggggcaaattttcagggacttatgaaatg
tactgttaagttaaaaacaggaataaaactttataaaccctcatataataccacaaaagt
aaacatgcatttctaaggtcttatctcttaattttgatatgttgaaccatgtataaatag
gtgggcatgtaattcaaagtctggaaaggaaataaaacatggtcaacctttgggcttgct
agccagcaagtgtagctatccattaagtttcaagccagtgagagagagacattgcttcaa
aagcaaggtagttgtcacctgatgaaaggtacctgagggctgagtcagtggacatcccca
aggtgcctagaggactctccacgagatgttaggaccactggtgtgtggaacacaacttcc
gttccattccaatcgtgtgggacctgaaacagcaataaggaagcagaaaaccctgcctga
ccagggtcacaagtcccttccggtctgcacaagcaccaggtcacctgggtgcagagtcag
cagacacacccaaggtccctagaggactctccacatgattttaggacctctggtgagtgg
aacacaacttctacgacgaggcaggtccaaacgccagatatctgtgcaccttgctgcaag
aggagagattgcctatagagagtgctctgaccactgaaactcaggagagatctagtctcc
caggtctgctgatagaggctaagagactcataagagaacaagctctaagcagagacaact
attacaactaactccagagattaccagaaggtgaaaagcagacgtaagaatcttactaac
agaaaccaagaccactcaccatcatcagagcccagcactcccaccccacctagtcctggg
caccctaacacaaccaaaaagctagacagggatttaaaagcatatctcatgatgatggta
gaggacataaagaaggactttaataactcacttaaagaaatacaggagaacactgctaaa
gacttacaagtccttaaagaaaaacagaaaaacacatccaaacaggtacaagtccttaaa
gaaaaacaggaaaacacatccaaacaggttatggaaatgaacaaaacaatactagaccta
aaaagggaagtagacacaataaagaaaacccaaagtgaggaaacactggagatagaaacc
ctaggaaagaaatctggaaccatagatgcaagcatcagcaacagaatacaagagatggaa
gagagaatctcaggtgcagaagattccatagagaacatcagcacaacaatcaaagaaaat
gcaaaatgcaaaaagatcctaactcaaaacatccaggaaatccaggacacaatgagaaga
ccaaacctacagataataggagtggaggagaatgaagatgttcaacttaaagggccagca
aatatcttcaacaaaattatagaagaaaacttcccaaacctaaagaaagagatgcccatg
aaaatacaagaagcctacagaattccaaatagactggaccagaaaagaaattccttccaa
cacataataatcagaacaacaaatgtactaaataaagatagaatattaaaagcagtaaag
gagaaaggtcaagtaacatataaaggcaggcctatcagaattacaccagatttttcacaa
tagactatgaaagccagaagatcctgaacagatgttatacagacattaagagaacacaaa
tgccagcccaggttactatactcagccaaactctgaattaccacagatggagaaaccaaa
gtattccatgacaaaaccaaattcacacattatctttccacgaatccagcccttcaaagg
ataataacagaaaaaaaaaaaaaaaaaaaaaaaaaaacaccacaatgacggaaaacacgc
cctagaaaaaacaagaaagtaattcttcaacaaacctaaaacctatactcaacaaaactg
gaaaacctggacgaaatggacaaatttctagacagatacaggtagcaaagttaaatcagg
atcaggttaatgatctaaacagtcctatatcccctaaagaaatagaagcactcattaata
gtctcccagccaaaaaaagcccagcaccagatgggtttagtgcagagttctatcagacct
tcaaagaagatctaattccagttctgcacaaactattcaacaaaatagaaacaaaaggta
ctctacccaactcattctatgaaaccacaattactctgatacctaaaccacagaaagacc
caacaaagatagagaacttcagaccaatttccctgatgaatatcaatgcaaaaaatcctc
aataaaattcttactaaccgaatccaaaacaatcattcatcctgaccaagtaggttttat
tccagggatgcagggatggtttaatatctggaaatccatcaacgtaatccactatataaa
caaactcaagcccttccgctcgactcgagactcgagccccgggctaccttgccagcagag
tcttgcccaacacccgcaagggtccacacgggactccccacgggaccctaagacctctgg
tctgctcatagaggctaacagagtcacctgaagaacaagctcttaacagtgacaactaaa
acagctagcttcagagattaccagatggcgaaaggcaaacgtaagaatcctactaacaga
aatcaagaccactcaccatcatcagaacgcagcactcccaccccacctagtcctgggcac
cccaacacaaccgaaaatctagacccagatttaaaaacatttctcatgatgatgatagag
gacatcaagaaggactttcataagtcacttaaagatttacaggagagcactgctaaagag
ttacaggctcttaaagaaaagcaggaaaacacagccaaacaggtgatggaaatgaacaaa
accatactagaactaaaaggggaagtagacacaataaagaaaacccaaagcgaggcaacg
ctggagatagaaaccctaggaaagagatctggaaccatagatgcgagcatcagcaacaga
atacaagaaatggaagagagaatctcaggtgcagaagattccatagagaacatcgacaca
acagtcaaagaaaatacaaaatgcaaaaggatcctaactcaaaacatccaggtaatccag
gacacaatgagaagaccaaacctacggataataggaattgatgagaatgaagattttcaa
cttaaagggccagctaatatcttcaacaaaataatagaagaaaacttcccaaacataaaa
aaagagatgcccatgatcatacaagaagcatacagaactccaaatagactggaccagaaa
agaaattcctcccgacacataataatcagaacaacaaatgcactaaataaagatagaata
ttaaaagcagtaagggagaaaggtcaagtaacatataaaggaaggcctatcagaattaca
ccagacttttcaccagagactatgaaagccagaagagcctggacagatgttatacagaca
ctaagagaacacaaatgccagcccaggctactatacccggccaaactctcaattaccata
gatggagaaaccaaagtattccacgacaaaaccaagttcacacaatatctttccacgaat
ccagcccttcaaaggataataacagaaaagaagcaatacaaggacggaaatcacacccta
gaacaaccaagaaagtaatcattcaacaaaccaaaaagaagacagccacaagaacagaat
gccaactctaacaacaaaaataaaagggagcaacaattacttttccttaatatctcttaa
tatcaatggactcaattccccaataaaaagacatagactaacagactggctacacaaaca
ggacccaacattctgctgCTTACAGGAAACCCATCTCAGG
Primer
(+)tgcatgcaatgagagagagaat
(+)CCTGAGATGGGTTTCCTGTAAG


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