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Human element [ hs2163 ]


Position: chr17:39,893,776-39,897,477 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: HAP1 - JUP

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGCCTCCCCAATAACATGCgtcaccacatccggctacttttgtctttttagtagagacg
gggtttctccatgttggttaggctggtctcgaactcccgacctcacgtgatccgcctccc
ccttggtctcccaaagtgctgggattacaggcgtgagccactgtgcccagcccaaagtct
gcatgtttcctatggtttctttgtcagcagaaagcttgaaggagacacacaaccccaggg
tttgctacgacagtgaggttgaagaacataaggaggtggctgttcgggcatcggcacagc
ccaggcttccgtgaggctacagctccataggctctgccgagtggtcctcccacagcccag
cttcctggactgtctctctgtgccttggacatctctgcagccccaaccaccaagcacaga
acagggcatacagaagaagcctattacactcctgctgaattaaattgtttctggccccat
gaggaagaagccctgggaaacccctggagagtttgacggggaagaaggcagaggcagtgg
gatggagaagacagagatgaagttaggagaccctgaaagctcccccagctgaccacaccc
tctaggtcagcgcactggcagccagcaactctggctacggccaccagagggcagtgtcag
cccgtatacctccccacgtggcttcctcacctacaggctcagtcgccccacagaaagtgg
agtagggacagagactccattttacaaatggagaaaccagggctcagggcccgtcattct
ggaagtaagcattttggcctggctgacagatatctgcctttcgacagcctagggctgtcc
aggagactgggggtagtctctgatccaggcctctcaagtggttttcctctgtcaaccacc
ccctccctctcctgcttctcatctagggggagaaatcagacacagcaaagacccttggcc
tcctgtcctccctcccagtgtgcatccatggaccctcctggatccgaaagaggatgggag
ggtgcagaagacttgccaggctgcaaagccagaccacccaccacctaattgtgcacaccc
cctgaacctggggcacattcactccagtgcccagccctgggcagcacacaggtggctcag
gcccctcctcctgccccctcccctggcctgaccctgggaaaaaaaacacctggaacaggg
taggtaatagaaagagcccctaagggtcggtgccagggacctgggggggacaggcaccgg
ggttactttctgcaggggagcagggtggaggggcaccctgaactaggaacaggggagacc
tcctcacccccgccgcagtcctgctgtctcctgcaggcctttcgggggccctcccccatc
tctgatccaggccttcccctccagaaccaggcagtggccgccatagccctcacccccacc
ccagaacccaggtacagtccctccttacatcagcagagaatgggggacttgagggcctag
gccctcagaggttcccctttaacttttctttttgtttttttgagagggagtctcactctg
tcgcccaggctggagatcagtggcatgatctcagctcactgcagcctccgcctcctgggt
tcaagcaattctcctgccttagcctcccgagtagctgggactacaggcacatgccaccat
acccatctaatttttgtatttttagtagagacggggtttcaccattttgcccaggttggt
cttgaactccggacctcaagtgatccatctagcctcggcctcccaaagtgctgggattat
aggcatgagccaccacacctggctccctttaacttttctcctcttcttaaagagcccagc
ccaactcctgggccactgagcccctctggcctggaacaaggaggtaacgaggtgctgggg
gcagctgggggtctgagccctctgcctgctgtcttccatggccccgctgctggccaggac
cgaaagggagagaggcaaggagagaaaggacagagagcaagtgccggggacgagggcaag
gggctgaggtggctgggacctcaggtggagagtactgacccccactctgaagttcttccc
cacctgggggctcctatcctggaggaaggccccgcctcccacacaggctcactcctgctc
ttggttctgatgtctgactcctcctctgagaagccctccctggtggggctcacctgtgtt
aggtatcctgtgccagatcaggcctctctgtgtcctcccctcccctggcattctctcccg
actctgtccgctcacagggtaagatgatgtcattgacaagatgatctatttagtaacaat
gagagcagtatctgttttgctcacttttgtattctcaggactctaatgaggcatccaata
aatatttgttgaatgaacacatcagtggattctctgggtatggatggtgggagtggtaat
cgccctggggaagtgacttccggtaagggtgagatcctaggactctggactcccaaacca
gggctccacatcccctggcacaggtgagcgccaccaggaaccctccaggggcacctgtgg
gagaggatggagaccggccaggatgtgagccacagatccccagggagtgagccttggcac
agccaggtgcccacttcttccctagagccctcagcccagccccgctcctttccccaggga
ccagagcaggaggcctgggctggcctgatatggagctgggtccagcaggtcggcagtgcc
ctgacctgggaagctccacgggaagcagctgggagtggggggaccacagcaccctctgtg
aggagggcaggaccgtcagctgcgtccagcctgctggacaggcaataccaggtggtggcg
agcctagaaggatgttctggccctttggcctccctgagctacctccaggctcagggataa
caccaaggagcccttcgctccctgacctctgtccccagagtcagcaattccctctcatcc
ctgcgtccatgtccaggctctgagcccttccagggacaatttgtgggattggggatagag
acagaggaataaatacacattcactgagacctgactaggtgccgtatggattttggatat
atttcattttatcatcactggaaggaaaaaaatactgctgtgttatagatgaaaaacaga
agcccagagaggtcaagcaacttatccaaggccacacagccaggaagtatcagggaggga
agatcacaaaggcttgtcttaccaacagcccatgtgctgtccacggcctcccagttcaga
gaagaagctgggcgaccctccctctcccgtacccaggggtgcctgtgctcactgggtttg
cttccacataatactacttatgagccaactgttaggtcttataaattagatgcccaccgt
gggcatctgccccatggcctctggaggaatcctgccagaggatggagataaaggaaggac
aaataccaagtgccttttgcagacgctatgtccgctcttccttcttcaagcctcagctca
gacgccacccagtcttgggagcctcccctgatctaacctggctggatctgggtccctgcc
tcccagatccaatgtgcttccctctacctcagccttccacacactggggcaaaagcaaga
agggcttctgtgcccagcttttAGTATCTGAGCCTGCCTTGG
Primer
(+)cagcctccccaataacatgc
(+)CCAAGGCAGGCTCAGATACT


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