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Mouse element [ mm2162 ]


Position: chr9:63,872,197-63,876,826 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad6 - 1700055C04Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCCCCACATCCCTACTCCTGgtgaggagtatgagttgagactttctgtccctcctgctcc
ttactctgagcacaagcatctctccctgaggtataccaggctaggagagactaaaacagg
accttaagaagcctgctaccttaagctaggcgctggagagatgggatatcactaaagtgt
tcaccatgacaacctgaattggatgcccagtggtccctgggggggggggggaggcccagc
agtgctggctggcaaacccagaattgagatatgggaggttgtgggggaggggcaaacaga
ggcagattcctggagctctctcattcctaaataaataaggaaggtggagagtagtcaagc
agacaatgtcaacctctggcctcaggcatatatatacattcacaacacatataccacaaa
cacacatgaaacgaacaattaaataaaggaataaataagagggctgctaacttaagcaaa
atttagcctcttggcccatgttcactaggagatagatatagggtggggtaatgtagccta
gaaaggatgccccctgcactacaaccagagtctggtaagcctgagtctaggactgatgct
actatggtacttctccaactgggtaagtgtgggttatcctctgtaaaatgggaatagcaa
tcatcatgccagctagggacagctgccaaagctgagggctgctcctcctcaggcccatcc
agctcaggacttgacacaccttataaccactagagggtgtgtgcagtggtggccagctgc
acagacctgcagagtggcagctctgacctccaccctactaaactgccaggctgggagtcc
ctgggatataaggaagagagggcaaaggaggaaggctggactcccatcgtcaaggttctg
caactatcgtcaaggttctgcagttgcaggaagtcacccaggaagaagtagctgacccct
tagcttcacacctgtcccctccttcctctctctcctcagagcactccatgattcctcatt
tcagtattgccccacttacaacagcacagttccatgttctttcccctgaaataaaggccc
ataagggcagagatcccaagtagccaggctaggccacccacatcagtgtgaatcagaata
agaccactggacacgctcctgtctgagacagttcttgcctcacttctcctggcaccagaa
caacctgcagggtggctgagttaaaattcccacttcaccgagcccccatgctccccagct
agactttcctaggcaccatcttctccaactctcccagcaacacaaggaaggtcttgttcc
tagactcttcttcaaagctggggaaacagacggtaggctattttgtttctgctcgtatgg
ccagtaggtggcagagttgagaccaggtgagtgagtgtgtggctccttagcacctggttc
tacagagaaaaaaaaaaagttgtcttttgcccctaggaagtttccacattaactagtaag
gactatgacatgaaacagcagaagtcactgaagctagagtttgcttctgagtgatgggaa
gggatctggatctagggagcatggtttacaaacaaagaagttatacagaacgcatagcca
cctctcaccatgactaaatggattaacaagaagattcatcataacccactgtacagaaac
tgattcaaatgcccaggccctgcttattagctctaggagaagaatttattatatgctcaa
atgttatattacaaccctaggacccactggctaagggatgttgtctactcctttggaaag
caaatctacttggtcaacataaacccaagtggaaaagttgggacacacttgaaagtgata
aacagcccttctggaattctgatacatgctacagactcttccttgtggggtcaggggatg
cccgtatactctaatggagctctgtgtttattggtgtttattgagctcctgctgagtgcc
cacctcctcctcccagagctggggaacctgcaataagccaagtccagtaattccagagtt
catggaatctagtgagaaagagacagaccacaaccaaaggagcagggtgctctgcacact
gaaaacgccacggccaaagtgaaaaaaagaagaggaaagaggagtgtcagggggcaggga
ggcatatatcagggaagacttccctgggaaggtgacattggagtgagggaatgacatttt
cttcgggacataattgggttgaggtcttggtggtgacattgacgtcatagtggtagttgg
ggcagggggttttccctcacagtctgcttgcaaacagctgcagggatggatagcagtgag
cacaagagccccgaagcagattcatgcctggaacgcatgtgtttagaacattccaaggct
tcacagaggtaaagaagtcagagaaatactcggggcagatgtgggcccatgcaagccatt
ggtgggtctttggcttgtgttccaggtcagttgggagccactgaaggtcctgagcaaggg
agaggcaggacctgctttctaggttatgtggttgatatgcaggaccaaaccctgggctgt
gtgcgtgctagctgagtgttctaccgctgtgctaggccacttagcccaggctggctttct
gttttactaggttccacctaactgcatgtaaagaatagcctgctgcccaggcgggagcag
gagcctggctgggagagtcagaggaggcctggaccagggtggaagcagtgaagaaaggga
agcagagattcatctgagacacatatatccggtctctgctgtcgcgtgcttaagagtgtg
cagtcactttttgaagatgaaatgccaggccatttggcatttatttatagtttttgagat
agggtctcatgtaatccaggctggcctctagcttgatatatagtcaacactgtgttctgt
tatatagtgctggagatcaaagacactttgtttatttagtatttgcctgcatgtatatct
gtgtatcatgtacgtacttggtaccctaaggaccagaagagagtgtcaggtcccctggaa
ctggagttccaaatggttttaacctgccatgtgggtgctgtgggctgaacccgggtcccc
tgctgtaggggcaagcctcttagcccctgaactatggctccagcactcagttccgtttgt
aattaataacatctacaaaggcaggacattagttatgtttatcgcttttttaaaagacat
aggttgacttgtgcatcaagtaagtctatttctctgtgtatcataccaaatgaccctggg
atcgccagtggctatgtgacaccgggttgatcagtatctaatgtctccctctttggtttt
gtttcatttgtctcaatgtctctcagaaaagatgattcctttggtttttgcctcgtaatt
gggggggggggcggccgcaggaggtgtatttccatagcactcctgaaccagttgctagta
ttattctagccaccctgggtctgaagacagctacagtgtacttacatataataataaata
aaatctaaaaaacaaacaaacaaacaaaaaaacagagtctcgtgaagtccaagctggcct
tgaacttgttgtataactaagaactaacttgacttcctgagcctcctgcctccaccttcc
aagtatttggattataggaatataccatggcggattgataaggtgctcagaatcaaagcc
aggagtctccacctaagctagatccccagcaccaggaaatgtatctttacatgatagagc
ttctttaacatatacgtatactacacagatatgtgaaatagataatatatttaaacttgt
aactgcttgatacttccacacatttcataatgacatttaattgtcccactccctaccctc
aactctctcccttgactattacatatatatttatttacaacacattctacattgatatta
aaactaatccaggcctggagagatggctcagcagttaagagcactgactgctcttccaga
ggtcctgagttcaatttccagtacccacatggtggctcacaaccatctgtaatgagatcc
aatgccctcttctggtgtgtctgaagacagcaacagtgtacttacatatataaaataaat
atatctttttaaaaaaaatccctgattcagatacaccaggcagtggaatgaaaatgttag
aaggcttgcctgcatctctcctcttccctctgactcctgacctcaaagagcttcccacac
gttctctgataccccaggctttactgtgggtgccatatgcctttctgtttgaaccccaag
cctcccttccttgcaggaccctgacattggcaggcccctcttcctcagaacttgagataa
cttgccacacccctagcctagcaccctggggacactccagtaatgttgggagaagggagg
cagattggaatttctaacagagtcagccagcttgccctccagtctgcataagacttatgt
ccatcagtcctcactctcagcctacgcacaccccacagatgcacttgcaaaggagggctg
tgtgctacttctgacatgtgcaaagtctcatccgtaactattattttataAGAAAAGACA
GGCTCTGGGC
Primer
(+)TCCCCACATCCCTACTCCTG
(+)GCCCAGAGCCTGTCTTTTCT


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