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Mouse element [ mm2161 ]


Position: chr9:63,840,893-63,845,506 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad6(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGTGTCGGCAATCCTGGAAGggccctgagcctcctggctgccagcacctatggctgcctc
tggccttagagcttccttctggccccacatagtccaaagctcctcccatcagccactctg
caaccccaggctaagactctgccagtttctgatccatgagaaaaggaggaaaatcccccc
aaaaggccttagccatcctctaaaccaaatctgtacctcagcaggcacagatacttgctg
cctccaagcctgacagcctgaattccatccctaggacccacatggtagaaagaacagact
ccccacacgttgtcctctgacctccacacatgcactgtggcatgtgcatccccacaggta
cacacaaaataaataccatttttaaattatatttcttcacctgcaacacgggataccttc
taatgactaatggtattcatctaaaaatgattgtggggtttggtttttttggtggggagg
gggtgttggtaggctttgttaggagacggggtctcatgtagccgagctgcctttgacttt
gctacatacagacagtgatctcgaacttctgattcccctgcctccaccacctagttttgg
aattatatatgtgaactaacacatctagcttatgcagtgctagggactgaatactgggct
ctgtgtctaccaggcaagcactctacccaccagggggcatctctggaaagtataaagtat
cactttacgataactctagggtggccgtggcacacaccattaaccccagcactcagaagg
cagaggtaggcaaacctctaagttcgaggccagtctactctacagagtaagttccaggac
aggcagggcatcgcagacaaacatgtctcaaaaaagaaaggaaagaagggagagagggaa
aggtgaaaggggagggacagaatatggaagccctgtgcacacacttagctgggacactgg
tggaagacgtggggaaagaagagtattcattagctaaggagtcaaacgacaggtcttcca
tattgatcttcagagtccaggcaatcccaatccacacccccactggccttcctgtggcag
tcagcaggctgatctaaaacacacaggcaaatggggataacctgtggaagtcaaaactac
cagaacaaggtcgaataactcacaatacctggtttccaagttcatcatgaaacacacaca
gtgatcaatgctcggacatactggaacgagaaaagatacacaccgaaacatgtagaagag
cccagaaggagaacctcacatgggtcataatcatgaacgtttttaaaaggcagggtctca
tgtagcccaggctagccatgaactcactatgtagtcaaagatggttttgaactccttcca
tctttacctcctcagtgctaggactcacagccctgtgccaccacagctggtggatacagc
actgcaggctgtgtggcttcctggagactagataaacactctgctgagccacatctccag
tctcatcaattagctttttttttttaagatttatttattttatgtatataagtacaccgt
tgctgtctttagacacaccagaagagggcgttggattccattacagacaaccgtgtgagc
caccatgtggttgctgggaattgagctcaggtcctctggaagagcagtcggtgctctgaa
ccactaagccttctctccagcctatcaattgacgtttgacaaaggtaccaaccaatacaa
ttcccaagaagggaatattttttggatcaatggtaggagaccttcatttaaaaaaaaagc
tgacagccagccagtgacggcgcataccttttatcccagcactcaggagtcaggagctag
cagatctctgagtctgaggctagcctggtcaacagagcaagttccaggaccgatatattt
ttacttttttttttcttacacaaaaaatcaattcatcatagattatagaactaaaaaaat
caattcatcatagattataaacctaaacacagggctggagagatggctcagcagttaaga
gcactgactgctcctccagaggatctaagttcaattcccagcgaccacatggtggctcac
aactgcctgtaactccagttccaggagatccaaccccctcacacatgcaggcaaaacacc
catgcatgtaaataaaagtaaatactttaaaaaaatagcaatttaaaaatctaaacccaa
aaccccaaacaatcaagtttccagaagaaaatctggtgaccttggagtttggaagaacac
ctcagaaggcgtgacacggaacaactgaactcgtgacaaaatgaaaaccttctgctcctc
aaagactccatgaagaaaatgaaaagccaaaccataagcagagagaagatatttccaaat
atcgtctacatggctgatacctagaatatataaagaacagtctaaagtcaataagcttag
agcacatcagaaaagccatacaaaagctggtggcagtggcacgtgcctttattcccagcc
tcaggaggcagaggcagacaaatctctgaatctgaggccagcctggtctacatagttcca
ggacagctagggctacacagagaaaccttatctcaacaaacaaacaaacaacaaaaaagc
cctataaagatctgtgcagctacgccatctaagaagaaacacagacaggaagcaagctgt
gcagagaagcactcaatacgttttgccaataggaaaggggtaaattcaaacccatctcat
gcagcccaggctagcctaaacttgagacagtgggtgatcatatggaactgattcccctgc
atctgcctctccagtgcggagatggcaagcaggcccctcacgcccggccagtcttacttt
gtgttttgaaatgttgggatatcaacctcacggcgtgatacacgctaggcaagcacatac
aggagctctctactgctgggctgccctgctccccagccctcctctctatgggaattatgt
gctaatagttccaaaggggcaaacttcatgcggcgggatactcaaaaacaaaaatttcaa
caacattcacagtatcttacctaggccaaaaaccaaaccctgtctcctcctgagatcttg
tcttcttttcctagctcctggtgaactgactgactgacagagcctgaggccgtgccagcc
tagagaggtacagctaactctccaggttaacaggctctggagtcaggctgacctgggtgc
aggtaacagtgacccgattcacttgttaaccctgggcaccttacttctctattctaagcc
ttggttttctcatctgtaaaatggacacaaatcaccacagaacctacattattaggaatg
aagcatatggaataagaaacatgtcatgtacattcatcttgtactttggccactattata
cacccgccataactgtcatgtgctgcccaagagcagaagtagatccaggtcctgaccaaa
agtcatgccttgtctggcagggggcagaaggtctatagaaagtcttctacatgaaagaaa
tagagagatggtagccattaaaaatacaggaaaaaaaaaaaaagaagtcgctgagggctg
cagtctctgagggcttcctggaagaggaaggcttttagtaaaagctcaaaaacaaattgg
gcgttgtggacatctctcagcaggtaaagcgctgactgtgcaaataaaacacaaggatct
gagttcaaattctcacactcaggcagaaactgggggtggtgcacgcttggaaccccgctt
gggagtagggaaggggacaaacccaggcaaaccccaggggcttgaaagccaaccccacag
aaacagtgagctaccgggtgtttgttcagtgagagactgtctcaaaaataaggtagatgc
taaagcaagagaggaagacccccaaacctagtgcccacctctggccctatgtacttcagg
gcatatacacatcaggcacaggtactgggaggggaggaggaagaaagaggaagaatagga
agaggaggaggaggggggggaggaggaggaaggagaggaggggggaaggaggagggggag
aaatggggaggaggaggagagggagaagaggagaaagaggggaaggaggagggagaggga
aggaagaggaggaaggggaggaggagttggtggcagcagcagcagcagcagcagcagcag
cagcagcagcagcagcgtggggatgtagctcaatcagatgagtggcttgcattgtatgca
caaagccctgggtctgatccacaagtaaatctgggcactgtggcacaaacctgtattccc
agccctcgggatgtggaggcaggaggatcagaagttcaaggccatatatagaatgttcat
ggctagcctgggctacaggagaccacttcaaacaaacagaaccagccaggatattgaatc
agaggatcaagcaccagggaaggggaggcctacaggatccctttcccaatcctctcttct
ccaccagatggctctgcccatcctcagagggctggcgcccggcactgtgcatctttggca
tttcctcccccaaacagccctgtgccaaggggcaTGACAGCAGAGCTTAGGCAC
Primer
(+)AGTGTCGGCAATCCTGGAAG
(+)GTGCCTAAGCTCTGCTGTCA


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