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Mouse element [ mm2159 ]


Position: chr9:63,783,190-63,787,805 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CGCAGCTCAGGGCATAAAACcctggattgatccacatgaatggagtgtggtgtcgcacac
ctctaattccagcactcaggaggtggagggaagagggtattaaagttcaaggtcattctc
agctacatagggagtttgagaccggcctggaagacatgagaccctgtgtgaaaaaataaa
gtctaaacaaggcagaaggttcctatctgtgaacttggaaaaaaactagaacagcttgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgcatgtgtgtgggtg
tttgtttgtatgtgtatgtggttttgtgtgtgtgtgtgtggttttgtgtgtgtgcatttg
tatgtatgtgtatatgtatgtgtgcatgtgtatgtttgtgtgtgtgcttgtgtgtatgtg
tatatgtatgtgtgtgtttgtgtgtatgtgtgtatgagtgtgtttgtatgtgtgtttgag
tgtgtttatgtgcatacatgcttgtgaagctcaagtgcacttgtcttaatccaagtttga
tatttattccagatgaaacattagacttacagctaagaatatctcgaagccataactgtc
attgtcattgctacagcagctgagcagcagaaggaagcagacacatggagtcgccagcat
acttgggagctggggctagccccagccttcactcctgcagccctcttcttatcttctccc
catctcacaccttttcttcctttcctggcatcgccacagtccccacctggaccagcctag
gtctatgagaccctgagggagtccttcgtgttaatcgtacagtctctgcaggtgtgaagg
tcaaaatgatcagcccgcttttctggaatgtgcttggtttgtttcatggccttgatgctc
tctgtgatactgccaccactgtcccctacaggtgaaccttcagctaagcccagtttgcct
ctggaatgaatccagtcacagataagctatttgcccaatcacctacagcgcttcctctgt
gagcttctggctggcgttggattcttccatgtacagtcttggccagctcagtcttgatct
cttgccagtcctccctgtgtcctgcatggccccctcagctgcagttcctccttctcctta
gggactcctgccgcctctgcttagaacacacacaagcatcactgagatgtcaccttcctt
tttcggtcccttcttcttcctttaggatcacggagggcagggtccttcagatatgcttac
agatcacctcccaggggcagcttctgccattgggagggtgtctgcagttccctctttaga
ggctctctctgggtggcctcctgcagttgggactccagtttcatcctgctagccacctca
cgttaccctcaacctggctcctgttcaccgtggctctcctcagcagcccctgaaatgttc
tgaatgtgaacgtgagctagcgggcaggccagaaggttaggaagtgagaggtttaggaca
gcaaggacagtactgtgggcacctcccagtgtgggtgaacagctagccagtacgtcagat
gtccctgtggcaccagcgtggcccactgatgggctgagtagaattcttagactttcaggc
tgttccctgttccctcatcagtccccttgataccttacctttatggcccttggtttcatg
cagagctagaagcacagggaactggcggtgccgatgacccaaagcttcatggcttacaca
gtaccctcgctatggccctcagccgcgctgtttaagatcagccaggggccagctcgttct
ccaacaccttggaaaaaacgcaggctttcctcattgctgcctccacccttcttgaaccct
ctggggaaacaaggaaaagccttgagcagcactcctcctgcctgccttgttcttaccagg
caacgcctcgcagtgccctgtgggaacccaaccagctccccggttcaggtatcctctgca
gcctctctctcctcttcagctggctctcaatctgtgaagacagcgtggtgagggagcaca
ggcagaggtgacgacaagatcatccctgccacagaggccaagggcagggccacaggacag
cgccctccattcctggtggccatggaggatctctgctttgccatcctggtgtccacagga
ggaggaggaagctgctgaaaacttcagcaccccctcctttggggacctggccctgagagt
cttttcctccagcgttttgatctggttggtgttcatatagcccaccagtgttacactgcc
ctctgggatggtgtgaacaggcagacactcagcagtgaatagtgccatagcaagataatg
ccacgtgcctcctgtggctgtctctccctttgctccctacctttgcttccttagagtccc
tgtggctccggagcctgctgacagagagcagctgacagtaaatagttcccagtgtaggct
cagctttcaggccctgcgctggtggctgggtagtggctgtcactgggtataaacatcttt
ctgcaggaagacagaggaaaggtaaaggctcacctccaaccctgagccccaggggcgtga
tgctgttgtctctgtaactcgaacccagagccttccacacgctaagcaaacctctatggc
caggtccgaccccaggctctcccttttctttgtgtttgtggcagggttcctggtaagtgc
tcaagctggcctgaaacttgttcgacagtacaggcaggccttgaacttgggctcctcctg
tataaatatacaggcttctcccactagcaatgtcttcaaagcttccatgtcctctattct
ttgcacacagttatgttcgtatctaattctttcttttttaatatctgcctgggcgtgtat
gtctacctgtttgtggtgaggtagaaggtcagaggtcagccacatatgtcaggatgccat
ctgtgttctagttttacaagccagggcctttcactgtctggaactggcttactcgggtct
ggctgtatttgctggccatggagctctaggaggtcttgtctctccattcctggcttataa
gagtttgtaaccacactaaacttttaaaagttattttaacttttcattagtatgtatgta
tatctatacgtgtgtgtgcatgtatgtacctactatgtgtgagtatgtataatgtgtgta
tgtgtgcgtgcgtgtgcgtagcacttcataccacacatttctgtggaagtcaaaggacgt
ctctttgtatttggttctcgccttctcctgtgaaccctgagagttgaacctaagttgcca
gacttgctgctgcaagcccctctacctgttgcactcaccagcacatttttttttttttaa
tgtcaggtttgagggattgaactcaggtcttttgtgcttgcctggcaaacgcttgactaa
ctgagctatctccccagtcctttcccctcaatcttctctttcatgtaaggtctcaataca
aaggccaagctagttctgaaattcctctgatccttctgcgtctgcctctccagtgcctgg
agtccagtcatggtaccatgcaaggcttactccatatttcttgaatttgagtgtgcacaa
actctacatgtcttgttgacatgtagattattctaactcactgaattttggtgaggttcc
aagactgcattctctaacaggcttccagcctttatcaatgctatcaataaagaatctcat
aggggctggtgagatggctcagtgggtaagagcacccgactgctcttccaaaggtccaga
gttcaaatcccagcaaccacatggtggctcacaaccatctgcaacaagatctgactccct
cttctggagtgtctgaagacagctacagtgtacttacatgtaataaataaataaataaat
ctaaaaaaaaaaaagacagctacagtgtacttacatatagtaaataaataaatcttaaaa
aaaaaaaaaaaaaaaaagaatctcatagttgggtccagccagtggaccaggatcgctatg
agtacagcccaacacaaagtcacaaacttaaagcattaccagggactttgttgttgttgg
tttttgttttgttttgttttgaaaaaacaatgttttaagctcctccattgggtggtcctt
cagtgtgaacctgtgttgcagtatcacgaggctgcacatgcctggagcgcgcatcttttc
tcgggctttgcaatgctccatttctcctcttacctctactttccttcttatccctccagt
tctaagagagcactgcctactagaggcctgtgaggtgacagacgctcctctgaaaggcat
tctaagaaaagctacccaagggccattgagatggcttagtggttaaaggtgcttgccacc
aagccagatgacctaagttcaatccctgggctgcagatggtagaggacagaatggattcc
cacaatctctgtctctccgtctttctctctttctctctttctctctttctctctttctct
ctttctctctctctctctctctctctctctctctcacacacacacacacacacacaagag
aattcaggtgccatatatctccagcacttcttaggaCCGAGTAGCACGTATGTCCC
Primer
(+)CGCAGCTCAGGgcataaaac
(+)GGGACATACGTGCTACTCGG


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