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Human element [ hs2158 ]


Position: chr14:76,477,329-76,482,203 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: IFT43(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCAACCTCATGGGCTCAAGTgatcttctcaccttagcctcctgagtagctggtattatag
ctgcacaccaccacacccagctaattattattattattattattggtagagatggggtct
cactttgttgcccaggctggtcttgaacttctggcctcaagtgatccttctgcctcagct
tcccaaagtgttgggattacaggcatgagccactgcacctggcccactcctctcttttta
acggcattgacacttttgaagagatcaggccagttcttctaccagagtttcccacatcct
gggtttgtttgattctttcttccaagtgtcattttacttattactttctcacctgatttg
taaactggaaatcaaattggaaggcttgattagattccagatgaatggtttaggcaggaa
gttttcctgggtggtgtcatgtgtttcaagtagcagcacattacgtcccactgttaatgc
tgctaagtttgatcactgagttaggatagtgatagatatctccattgttaaggaatgttt
ttctcccctgcaactagcatgtaatatatgggttgattctttggcactgtgaaaatgccc
agttgcccaccagtcagtcttgtacctaatggctttagcactcactgatgatcagctttc
tttcttatacgtaaaatagactttgcgttttgatatgtccatttcagcttgagagaacta
tgtttattcacaggagttcacttataagattgagtgatccattaccttccatgaccttaa
atctactatggagaaactcagttctctgagggattagttgtcagacccagggttgaggca
ggaggaagaaactgggagagttggaactgtgcgtggaggacagattgcaggagtagatgc
cagccctgaagcgtatgcacataccgtattactatcagtcttttcacttgccaagcatat
aaagaacaactttcttggatcttctctaagattgctggagaaagaaagggaagtttgttt
ttagtcagtaatgtaagattgaatgtgggagctgcattgcccctagaagctggaagatgg
atatgtgtgaagtttgcaattgatcttgcttaactaaatgtctttctgttggaatttatg
catgtatttggactggctttttgaaacaggttgcaatttggacttagaactcttggcctg
attcatattttggggttagggtggagtttctccaggacttctgagagtgtgtgagaagtt
tctaaactcagaaggctccttttttggcactgcagcatcttttctgttttggcatcttaa
gaatctgggggaaccatataaagatcagaaacaagtctggccctaaagactccctctgac
atggtaattccagttattgaatcctagcccattcggatgagaccatataaagaggccatt
tcctgaaattcccgctctctgcctctcacaggctcctttttgtagaaagctggtatttca
ggactgcaaccgccagtcacgtgcttccaactctttactcacagtcattcctgccccctg
tttatttttggagagaacacatttttgctgcttttcaggagctatgcagggtcctgcccc
ctccgtccatcaggcggcagccccagcaggctgtgctcatttcccacactcggagacgtg
actccagcttttaagagagaacacaagagatgcactgcctgaggactaccgtcacttgtt
cctatttctgtccctcttggtgttacatattttaagactctttctttttttaaaacaagt
ttagggaatgttacctggcagtaagtcagccaaaattggaaatcatttgtccagctgttg
tcttggggctgtgcctctgaatttcaggagagtaatttaaagaataaaccaggacttttg
aattctaggatcaggcctcctcttctttctggcttttaagtttgtttgagctctaatcct
tctcttccatatagtttcttcctcttctccttgacacagggatagaaaataggttcttct
aaaatgccaactcaaacagatgtcttcccaagtgcttggtcaaggaggactcttgagttg
atgggctttaggaaaaaaatgccacgactgtcttagcctgcctgaagattaagtttttag
cttcagtgatggagcaggagtaaattcttcttcctgtaaatgagtaggccattaggtaga
gaactcagactcataacatttgaagaacaaaataaatcatgcatttgtgtcttcctctgc
tctgtgggaaggacccctggtccaaatggaaagatgtgtgaataaagggctttaatttct
catcagtccaggcagggactggagctttgacagttgagctggtgagggcgttcgcacccc
cataggttccctagcatctgatctgtcacctccggaaagggaaggccaacagtccaggca
gctggtcataaaacgagcaacagcagtggctggcctaggtgtgcgtcctgtgtttcagat
tgccctggggagacagccgttttttgaaatgcggataactaggtgtctaggtgtcatgaa
acctcttagggagagcagccaagtattcagggactggactgtctatgcaaaagaaaccaa
ctagacctttaaaatcatattgctggggaaaggagcagcaacaaatccaaaatggcagcc
agcagaaggctgatgaaggagcttgaagaaatccgcaaatgtggaatgaaaaacttcgta
acatccaggtttgaggaaactaattcttgacttggcaagggctaattgttcctgacaacc
ctccatatgataagggggccttcagaatggagatcagatttccagcagagtacccattta
aaccactgaagaccacagttaaaacaaaacaaagatttatcacccaaacaatgacaaaaa
ggagcaagtctgtctgcaagtaattagtgctgaaaactggaagccagcaaccaaaactga
ccaagtaatccaggctgtcatagcacttgtgaacaacccccagcccgagcacccatttcg
ggctgacctagctgaagagtactctaaggactgtaaaaaattctataagaatgctaaaga
gtttacaaagaaatatgaggaaaagcgacccatggactaaaatctactgcagttgattcc
agcaagtatgagcagagaccccaagcagtgcattcaggactctgtggaaaattgacatgt
gctaccacctggcattcgcttgtggcacttactaattttccatagttttcttagtccaaa
gtagtctaggtagcctataaagaaaggattaaaaatttaagatgttctaaaaaaaccata
ttgttacaagccagtcatctgcttacatttcagattgtttgtacttaatttcaaactgcc
acattatgatcaagttgcatcagcttccacttaaggcctgcattgtagagtaatgaatgc
tgagggcctcaaactcccaaagccatttcccggggacccttaaaatataatggtcaagta
acaaaattttgctacaggagagttatataccatccccagtatcactacacccttggatct
ggttgcttctggaatgcttttttctttacatttccaatccaggacaagccccactttgcc
cataaacttccttgacctctccttctcctcagcacttcctgagtgtgtacaattctgttt
agcttttagacatatattgtaagccttatgcatgcttatcagagcagccttaataatgcc
ccagtgaaaaccaccaagatggcaagaaaactgcaaattttggtggaagtgccccatggc
tgagggattcttcagcttcacctttggaccctggatgcagcctcttcctggaacaattct
gtgtctccatcactgacgcctacttctcacttccattgtggccttttgagtttcagatta
agcctgacatccaattacgtggatttcgtacaggcctgatacactgaactctgcgtgttc
ttggcctcatggaacatttgggacagggatgacatcttctactttttctattgcacctag
tgcacatgggaccagtgccgagttccccacataggtaacaaggttgatttctggggaaga
gcatataacttggtaatagttattaattaagtccgtctcatccagacagggtatttgtgt
gtgcccctaacaagactcatattagggggtgtttacaaaaatattgctaatccttggact
cagagaactaaatcatgtatgtaaggactttccctcaggagataggcatttccctctaaa
tgcccaagcctactttgcagagagctaagcctgcctgtccctcctcctctcccctctgct
tcagtgctctctcctgaggttcgccagtgggaagcaagctaactaccatagctcctgact
catgttgctcaggggatttctttgcaattttttacttttctgaatgatctcaatgttggg
gtggaggaaatgaaaagtagcttatacagtttttataatactatatcaattcctaatggc
ttcagttattagtgaaaaaaatcctttgattttagaagtaggtgttaaactgtattggct
ttggaggagtgacttttagctggtgatcgctttgttttggagctgcgggtaccattttat
aatgggaagaaaatgagaggaaatgtggctttgtgttacctcttggcagaaaggattttc
acccaatagccatggcttccttgggtttgtggttaaacaagataaagctgatattttggg
ttttagactcttagggaatgctattaaccatttgatatccgttagtaaagtgacaGTTCA
GTCCAGGCTCAAAGG
Primer
(+)TCAACCTCATGGGCTCAAGT
(+)CCTTTGAGCCTGGACTGAAC


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