Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2152 ]


Position: chr9:63,618,278-63,622,970 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

Expression Pattern
hindbrain (rhombencephalon) (9 out of 9 embryos) 
midbrain (mesencephalon) (7 out of 9 embryos) 

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Embryo 5

Embryo 7

Fasta sequence
ATGCCCATCACAGAAAGCCAcaactggacacacgcagagatcaatggatcatggggagcc
cagccccaatggtgacatctgcatcacagctcctcgtctgtgtgtggttcagggaacatc
gccgccgaagaggtggtgaaagactgtaaaggcagggtaccaggacatctcccctagaaa
cagctgtgtaaataagacctgaggggggtctcaggggtcctatccctacacaaagaccta
aaaggaactaatgactgctgagaggagaacgagtctctctgaggagcccctagttggtta
tctaatacaaagtggttggctcaaaacaacaaaaaaggactcagtagcatgtgtgtgtgt
gtgtgtgtgtgtgtgtgtatgtgtaacaataacaatcaaagaaaaagaagctgtcaagct
gaatgtggtggcacatgcctctaatcccagcactcagaagggagatacagggtctctgtg
agttcgaggtcagcctggcctaccaagtgagtaccaggacagccagggctacccagaaaa
ccttgtctcaaaaacaaaatgaaacaaaacaaacaaacaaaacaagacccccagaggttg
tcaattgaaaatgagaagtagaggccggagttggaggaagggcacttgggaggggcgggt
ggggaggaaaagtaacacaattatattttaattaaagtgtatttttaaatagaaataata
aagttcagagtgtgactggattagcaatcaggaatccaaggtctcgcagctacagcatag
catactgacttctgcagcaggccttcctcagcctggacacctgcagtgtctgggttgggt
actgtcaagatccgggcagtctggatcccaatcctcctgtttctggtctggattcagctt
taatgcactgtatgttacagccctcagatcactcctaggaaatgacaaggacctgcacac
tgctgggtgatccaccgctctctgccactcacaggtccagaggatgtggctgaggctcca
tggaagaaatccctcaaccagcaaaaaagttgaagtttagggccttcccagaagtgacag
aggaatagacatcaggttctttcaatggagccattctcaatttggatctgcactcctacc
atcagtgtccctatccgtaagaccacacaactgcacccatcttgggccaagtaaacttgg
gactccatttcattagccacagcagacattgctaatcaattacccagttcttcccttcct
tggaatccctcttaaaccctgccagcttccatgctgctggctaaaacccgtttgtctttg
agactcaggctctggcctcattccaccaatggagacacattcctcaggcctttgggaatc
ccctctctagacccaaacgactgtgggagagaaacacctcaagttcctgtcagctttaat
caacagctgaactctcctggctgatcctgccaagaccacccaggaggccctggagataag
agcgagaggggagctgacagaagaaagtctggaaccacgagggcatccggatccacattg
ggcctgagcatccatcttgggagagcacacccaaggtattttatggaggaaatgctggac
aacaatggcatggccttctgcccttgagtggtggcacacagcttcatgccacagccagaa
catgagggccgtgtttccatccactccagcagacaaggcaggaacgcatctgggcaatga
ctgtgtggccgtgggtagtacctgggacaaagctgcctctccctaaggtctgaatgagct
caggcacggactctctgaggaacccaacctccatccttcaagtctgcataagcctcagct
gccagctaaccaacagcccatgtgttttcacaggggctcccttcccctctcacattttct
aagcaaagcctgttaccctaacaatgtccagaacacacacaattctcgactccccctcaa
actcagatcccactcacggcctgcagcttttgtgctgtgtgacacatccattaagtgtgc
cttggaagcagatttaagccaggttgaggcaggaatgcatttatcttcttggggctgcag
cagggaatctaaaaatctcctcttgggctcaagtcctctgggaaggctggagttacatgc
ccagcacctcggcagtccagctatgcgtttcaggattggtcaattctaacaggggaacgc
tgttaataaacggttactcaggagcagcgaggggacagaccacgtgtggagactctaagt
ggatacattaattatgagaaggaacggcatgtttttatttcaaaataagactaaggaagc
ttgctgctcccacatacgtgtgccccccaccgtctgtctgtctgtctgtctgtgtctgtg
agctgacagattttctgaccatactccagcatagttctgcttggattaagtagacacacc
ttctgggagtggatacatttcattcaatttagaagacagggtctaccctgggcatacact
ctgagaaagccctccttggaaggaccagtagataaagcaagcaggtacctaggccagggg
ggcaaaagtcctctccctagtccaaggaaaaaggttgaactcaattgcataaattctgga
ttttgcaatccgaatctctagaaggaagccattccaaggtcagcaggcagtggggcaggt
ggcatttttttcaggccagagtcggtttgatttaaacctcatcaagggaggccttatctt
ctaaggtgactccttcacctggcccatcctctgggcagttcctgcaggcacacagagatg
aatcagacaaggacttgaccacagacgcccaaactcagctgctccaggctccaacattca
gcctagcagtgatgaagaggaaaagcagcctttgtttctgcacagcttggctgtcacctt
ccagagtcctggaatagaggttatgagtcaagctctgttctggggaccacactcacatca
gggtagctgggcaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
atgctcctgtgtgtgctcctgtgtgtgcacctctatgtgcatagtgtccctatatgtatg
cacctgtgtgtgtgtgcacctatgtgtgtgcacctgtgtgtgtgtgcacctgtgtgtgtg
cacctgtgtgtgtgtgcacctgtatgtgcgtgcacctgtgtgtgtgcacctgtgtgtgtg
cacctgtgtgtgtgcacctgtgtgtgtgtgcacctgtgtgtacagatgcatacggaggcc
aacagtcaatagcaagcatctccttcaatcacttcccacctagcttgctaatcttgttcc
tgccttcccagcactgggatcacaagcctgtgctgcttcatctggacttgtagacaggtg
ctgggaatccgaactcgggtcctcatgcttgtgtggtgagtactttgccactgagccatc
tccccagccccctctggggagatttgattggatcttgactctactgatgtgagtgttagg
ggacaatgcttgctttgctgcttctgcaaggtcctaggatgtccctgagcacatcacaga
agtcttcagagttggttcctcaccttccaccatgaggtaatgaagggaaggcacccatga
ggctgacagacgctgccttttctccccctaaggtttatttttatttatgtgtttgtgtgt
gggcttgctcatatgagggcaatgcctatggaatccataagagaacacagaagagggcat
tggatcctctggagatggacttataggaggttgtgagccacctcatctggtgccaagaac
caaattcagggcccctgaaagagcagtaggtactcttaaccactgagccatctctccaac
cctgacaccctccttcacagcacccatctttcccatccatctcccacacacccagtcacc
tccaggagtgtaacaatatctgtccatatccttatttacacagtggctctgcaatgccct
cccctggtccacaaacctccctgtgcaagatcaggcttcgaagttgaaggcacttagttc
aagccagaagaaccatgtgtgctagaagaacccatctacctcatgggtgtgtctttgtct
ctccagaagaggatcatgggaagaaggtctttttctttctagccctcagccttccctagg
ctcagggcaaggggcttctgccttttcaccagagggctccataactaggtgcaaaggaaa
agaggctttgagttttgctgctcagggtctaaaactccatttctctgtgctagcatgtag
catatatgaggccctgggtttcatcccaatactacaaaataaatagagaataaataagac
tcggtggcttgctggtcttgcccaggttaggccagggttacagtatgagcaggtttcccc
gtccctgggtaatgcccttgcacataactcacacatgaggaacgaatgcggccatgtttg
tgcagagtttatttagataagaaagcagcctcagcctcctgggaggggccaccgcagagg
gcaaggcacaagttagttattaatcaccatctgcaggaaggcagagttcttaaggcacag
agcagcagagcaggcacagtgctagagtcaaaggcctgtgtccaagtccccatAAATGCC
AGGTAGGGTGGTG
Primer
(+)atgcccatcacagaaagcca
(+)caccaccctacctggcattt


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.