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Human element [ hs2152 ]


Position: chr12:98,883,495-98,887,039 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC643770(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CACAGCACCAGGTCAGATTGtaaaacttttaatttttatttattttttttattttatttt
attttattttattttttgagacgaagtttcgctcttgttgcccaggctggagtgcaatgg
tgtgatctcggctcactgcaacctccacctcccaggttcaagtaattctcctgcctcagc
ctcccaagtagctaggattacaggcgcccacacccccaccccatgcctggctaatttttg
tattagccagagatggggtttcaccatgttggcctggctggtctcgaactcctgaccttc
aggtgattcacctgccttggcctcccaaagtgctgggattataggcgtgagtcaccatgc
ccagccaaaaattttattttttacctttttaaggtgcaagactctcagtaaattctctcc
tggttaaggaaaaatatctggaaagggaaggggattctctactgaaagtagattttcccc
acaagagacacctttgcagggccatttcaaaatgtgtcaaaaatatatatatattttttg
gggtaaactacttcaatttacttcagggcctgctgtctgtcatgttggtatcttactgct
acaaaaagccttctttgtcagacttatgttaatgctggtcagatgtgcctgaatcccaaa
gggactctgtcccaaagggaggagagtataatgaggcttgtctgaccacctgttcccatc
atgacatgaactagcgtttcaggtaactttggaatgcccctggacaaggaggcatccatt
caactgattggggagcttagaattttatttttggtctacatggtaaagcttaaagttgcg
gaaatcattatcctcagtcaagctaaagcctaggtatccagacctctctttcacctaatt
tatttgcaattaatccaaagttctaggccaggcacagtgactcacacctgtaaacccagt
cctttgggaggcggaagcatggaggatcacccgaggccaggaattcaaggctgcagtgag
ctaagattgcaccactgctctcccgcctgggtgacagagcaagaccctgtctctaaaaga
aatttttaaaacaaataacaaagtactggtttatgctgtatttataaaacaacatatgta
gtaagattttcttagttttagaacccagaaagctgtgccaaatgctttgagagttgactt
atttcctattaggttttttaaatacttgcagtccagatactgcttttaattttttaaaaa
acagtatccatacttacaggctctgattaagtttcaaagactaagcctgccatgcttgtc
ggtgtgtgattccttcctctaagattccagacattcccgtctccaggcatcactgtgtcg
ggggagcgctgtgtgaaaatggctgtgatctttgtgcggtttgtccggttatacctcact
gggacaccagagggcgcaaggagggccagcacttgtttttctttaaatctcgaatcaaag
tccatgcagagaacaacaaaagacccggaacacaggggccttgagacaaagggactcagg
ggaaaaggctgcacgccctgttttactgaagtggaatttgcttcttcaccctcctcacct
cctcacctcctccccaccttaaggaactagaaataaacaacttaagctgcaaaataatga
aatctggctaacaaggaaaaccaaactagaatacattactcaacatgtcataggctaaga
ggactatcacaaatgtacatttgagctatttgctttgcctaatattaataactttaaaga
aaattttattgtttgcttttctgagttcaatatatgcacatagtagaaaatttagaaaag
gtggaatagcaaaaagaacagcgatcatcaacacactcttaacccagatataactacttt
taatatcttcagctacttctttccagatgttttcttctttctttcttccttttttttttt
tttttttttgagacggagtctcactctgtccccatgctggagtataatggcgcgatctag
gctcactgcaacctccgcctcccagattcaagtgattctcctgcctcagcctcccgagta
gctaggattataggcacccaccaccacgcccagctaatttttgtatttttagtagagacg
gggtttcactctgttggccagcctggtctcgaactcctgacctcaagtggtcctcccgcc
tcagcctcccaaagtgctgggattacaggcatgagccaccgcacccagccaccagacgtt
tccagtacttacaaatgcatagaaaaaaaatgggattctgcgtgctattttgtgctggtt
ctcttcttattttctagatcactaacttcattttattgataaattctgataataaaactt
tgctaatcatatgagttaatcacaggtaggagaataagaaatttcaaaagctacaggcag
cttttttcccaaaatagcagcaacttgaatgccagacctgagtcatgcatttgaagcaga
agtttttctgttgctttgtgtttagaaaacacggaaagactaaagaaaaggcctgtcgca
gtggctcacacctgtaatcccagcactttggaagtccaaggcggatcacaaggtcaggaa
tttgagaccagcctggtcaacatggtgaaaccctatccctattaaaaatacaaaaattag
ccaggcatggtggcccgcacctgtagtcccagctaatcgggcagctgaggcatgaaaatt
gcttgaacttgggaggcgcaggttgcagtgagccaaggtcacaccactgcactccagcct
gggtgacagagtgagacgggtctcaaaaaaaaaaaaaaaatccaaagaaaagaagtagaa
actgttccatcccaccccaaacaggctgaataatttgtccttctgggtagcctgaggact
gaatgccaaagggccagggggtgtgggtcaccaggaccctttgttcctcacactggggct
agtgtttgcctcaaagctagacagatcagtaaagctattaaccgggataggtcagcaggt
ggtcagtagggcaggaaaaaagtcaggaaaacggaggtcactgatctcctgttgggttgg
ggccaatgttggcaggcaggttccttaaaggacaggaagcttaggccagcccaggaacag
ataactctaaggaaagtgatggcaagatctgaggccctgaaaacctctgagggacaccta
atcactaagcccacagattccttaatttacagcaacagataaaggtgatgttctcggcca
caggaatttagttaaatcactggagctgtctggcctcagtttccttatctgtataacgaa
aggatcaagaagataggtaaggttcctgtcagttcctcaaagattgtgatgtttaattct
ccccagtcatgcattataatgaaaggtgaagacatttcctgccccctgccactccagtcc
cctaagcagcagcccctccaccatatactctttcccgcattgccaCTTTTCCCAAATTGC
CACAT
Primer
(+)CACAGCACCAGGTCAGATTG
(+)ATGTGGCAATTTGGGAAAAG


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