Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2151 ]


Position: chr9:63,573,845-63,578,606 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGGATACAGGGACGGACATtcattaggaattgatgccggatttccccttcctacaagaa
catacctgatccagtggcaacccatggcccggtgtcttcacccctgctttccagtcctgt
gactttgaactgataaagtcagttgccacttgtggtcccagtttactctgagagaattca
ggagtcacgtccactctctctagaggagagtgagagtggaaagggcgtggccttggagca
gagggtgtggggactatgcagtgttaactaacagccgggcccccaggacataaatccaat
ccacaattcagggcaaagtccacatctaagaccatttcaaactgctatccctcctcagag
cctaaactccctccatgtctgtcctcagtgacaagcctaccctccaccccactgtatacc
ccacagttatctctcccccctctccctggggacacatgagtacctcagtacccacttcca
cctgccctctgggggctacgctggcctcctctgtacagccatcctccccagcgctctgtg
gtctcttctcccaacactcaaagcttgttttctttaattagctcactgtggcaggagaaa
aattctgccccaccctcgaaatgagcggctgaggcctcaaatgtactctgtggtctgcct
ctgggctaccaggcctgagccaggcagaaagaggcctgcttgggaggccaggcaggaaga
aacccccccgctactcactctggccgctccctccccacagctgacgctggccctgcaacc
acagggctgttcccttcctgaggccccaaaacctgccattgtggctcgggccaggggaca
aggccaaacccatcagctttctctctccctcctccttcttccttccttcctgacctgatc
aggggaagccaggcagtcctagcactgcctcacctcccgggtgctgcaactaatttgaga
tactgaaggtttatcacagagttcccagtatcggtattcagatatgcttttttaaatcaa
taagctttattatggtattttcatatatactttatttttttaactacttttgtatgttgt
atggttcatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatatatgcagatat
agatatcagaggtcaataccaggtgtggtctcccaggagcttatctactgtgtcttctaa
gacaggctctctcaatggcactggcctggggcgaggctggctggctgtttccacttctcc
agtgctgggatttcaagtgcacagccccacacctgtcttcttaggagagctctagggatc
aaactccggtcctcgaccttgtgtgacacgtactttaccaactaagcaatctctcctgcc
catgtacctgatgcgcattcatccctctcgtatcccagctcccctgaaggctttctctcc
acatagtcagctaaatctcaccccatgaggaaggcttacccatcctcactccattccaca
gataaagaaactgaggctttcctgagggagggacagttcaaggcactgacagggacagag
gctgagatctcagatgactctagagcgtcatgtttcaaccgctgctatttgtcttcattc
tagcagtttctaaagaacagcttggagagctgcttagggggctgggatagcagcccctca
gacacattcagaggctcagaagttaaaacttggagctggggctctgagtgcacaccagca
caacgccatctttttcctcagccttcttccccacgactgcagcaactacttacataatgt
cggctcagtctcaccctgtaaggtgggcctacccatcctcaccccatctcacagataagg
aaactgaggttttacggaggaagggacagacctggtgacctggttcatcctcgtgaccac
cctcggtggtagttaccattatcttcattttatatagggaaactggggcttccaaagact
ttgacgacctgctctagaataagcaaagagtaaacagaaggacccgaccgatccaggatt
tcagcctccacatagcccacactcctaacagccacaaggacaacagacctggctgatact
caaatcagagctgcccaggcttctatcctaggctgtgcaaaagctcctaagagtgaatgc
aatgtactccccccaaaatgctcccccaagggcaagttaagggtagcctgtaatgccctt
aactgtaatggtgccgttgccaccgccagcagttctttagatcaagcaaatactcatttg
tctgtgagttctcttcagtcaactagcctgtgattagatccaggatctagcaagaacccg
tgtgcacaaggcctgggacctccagcccaggacaacaggcacactggcatcatagtgtgt
gcatagcatagagtccatgagctggacatggtggcacctgcctcccatctcagcactcag
aggctgaagcaggagaatcactagaaagagccaggccagcctgagcataggatagtggat
tccaagccccctatacacacacacacacacacacacacacacacacacacaaacacacac
accacccaaggcactaaaataagcttttcccatctcattttgtcatttaacatcgtcttg
agaaaattatgattttactattcacctagatgtgtgatctcacatgacaacggttctaga
caagcttttaactggtctatagaatttttgtgcacagaatttgtgttttactcttgcatt
ctgaccaggacagaagcagcgaagcccagggccaacttcactccacagtctctccttcac
gctggcctgtgaacacactcccctcaagggccacaggaaaagaggtgctgtgaggaaagg
ccctgagggcagctccaaccttcctcttcctcctccgcgctcactttcagagtaagttgt
tggccgatggacgatggacggaaggaatagagtgaggagacaggcttgctgggtcagcaa
gttttcccagaggtgctttggaaagcttttctttctgcatccaaaacaaattctggttca
agctctgagcgcccaggccacagctgtgatagcttacctagcactcggtttcaagccctt
cgaaatgagtatctggctgaatcctgtgctcatgggacactgcaagcacggctaggaatg
gggcagaaagaaccacgtgttcctccgcatcccattcctcaccccactgaccctcccttc
ccctgccctcccctcacagagcactgcttcaaagaaactaattatcaagaagagatccaa
gatggcggccacaggtcactgaaccaagcaagggtctgcgactccccatgaaatgcccgt
gagggtggccacacctgagggccacactcaagtcacactccggggctggggaaatggctg
agcaggcaaaggggcctgtctccaagattgacaacctgagttgaatccctgggatccctg
tggtggaaggagagaactggctctgggaagttgtcctccaaaccctacatctggcctcac
cacacatccatgcatgcacacgcaaaacaaacaaaagacccactcccacagctgcccttt
acccaccattttatatcattcgtgtgctcagctcacatctgcatgtgccctggaatagct
atgaagccaaacccaaactgacttaaatccacttacagcatcatgagatcggtcctttgt
gtgagttttgtactagtaactagactgtgtccttgggtataaactttataaatgacaatg
tcatgtcataatgtcaaaaatttgcacactggggatactggagctaaagataccacctca
gatgtctgagaaatgcaggctaaagcctcagacactgaaaagggagaccgatctgtttaa
atgctcggccactttagtacctgaaggactaggagaacacagtggccttcctgtttgagg
atgacacactggctgccaggtgccagcttgcttgcctacccagctaaagtcagtcaggtg
ggagagcagaaaggttgaaagcccagcggttaagagcactgaatgctcttgcagaggacc
cagtttagttcccgcctcacagccatctggaactctagttccaggagatcagacatcctc
gtcaggcctcagtgtgcaccagacacacaaacagtccccatacacacacactacagacac
tcataaaaatacattcatctttaaaataaagacagatgccaagtgtccaatctacatctg
attatcaccaagggatggaaagatgggactggtacttcctggctcttagcaaggtgacaa
agacaagctaaagtttgtacagaaattaaacccctcttacaataaccttaaaatactttc
ctaatggagggaatcaaggctcaaagaagtcacatgacctgcctttggtctactcagcca
gccaggttcagggtgattcctctggacctgccaccacacaccaagtatctcctacacgaa
gtacctctgccgtctcagaagttggagctaccaggtatggtcaaaacacacagatactta
actgcagagaaaatgacagcaactctgagtccacattgctgtggccaaccaaggcagcca
caacctgctaagatttttaaaaaaggttgaagcatgggtcctgagggctgcaatagagac
atgtggtcacatccctgcctgctctagtgcagcctgtgctgcggcagatcgcaggtaatt
acGAGCTCTGATGGTTGTGGCT
Primer
(+)TGGGATACAGGGACGGACAT
(+)AGCCACAACCATCAGAGCTC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.