Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2147 ]


Position: chr11:2,552,386-2,556,805 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: KCNQ1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCAGGGACCTTCAGACGTGccctgggctccacatgcccgtctgcagctcgagaattagac
gtgccctgggctccacatgcccgtctgcagctcgagaattagacgtgccctgggctccac
atgcccgtctgcagctcgagaattagacgtgccctgggcttcatgtgcccgtctgcagcc
ctagaatcaccagcagcaccccaaggcccccatgcggcatctaaaccaggcaggggacag
gggcatggagcagaccaggtagggttgctccctaggatgcagccctgcccaggcaggagg
gcagaccctacacagtgctgagctgtgcccccagggaagcctccaagatggtcctcatcc
cagcagccctgcccactgtctgcgcatccctggggtctgtgcgccacctggtggctattt
gctgaactgtggccacaaacccctggtcagcaggaaccggccctttcactgccctgcagc
tccctctcctccggggtggcatggcagagaagcagcccgtggccccaagcatagagcccc
ctttctgctgtagtcccccttgcagtcccctctgccttttccactgcttggaaggcagag
agaccctggccgcctcccttgtccctttatctgtcatgccagctgcctccctgccacacc
ttgcgtctcaccaggcaaccctgcaaacagcagctggggaggactttctaagacaaaaac
ctgatcattccagaagctccctgtgacgtttaggctacattccccaaggtggtgccacgt
tcaggcccatcacctgtaacactacccaccccacctcacccagcctgggctcactcactc
caggccaagccttggacattcctggctgccccagggcctttgcaagccctcttctctgga
cctggctgtcctcgggagtgtcagcactcagcctcttgtcaggtttcaggcctctgcttg
gcactatcctgcacaccatccccgccgacctgccctgttctgggttcatggggctctggg
aggctcacaagcatctgtctgcctcaggccattccacactccctgagggtgggaccccgt
ggctgcgctaaccccacaagctctgcatggcgcttcctggccgtgcatgtccctccctgc
atcaaatgcataggccagagttgcccagcgaggatgacccagcttggtatgtgctcccgg
cttcagctgcccctgcgtgatggagacaccctcccactcgccttgccacacttcccagca
gtctctcgaagcactggccgcgtggaaacaaatccttcaaggggatttgagggtccagct
gtcactcagtcatggccatggtgggggcacgttggggacacagcagagagtgaggcagcc
gtgggcctggccttgacaggcggatgtacagacacatcagggccgagactgaggcgtggg
ctctgggtggggagacagtgaccacttgcttggaggagggggcgctcaggtgggaggggc
acagtgagaaggaggtaagctggtgctggcggggcaggcagggacccctcccagggctca
cagcttccagcggacagcaggcacagggctgtggggatcagagcacaggcagaagtcacc
tgacagcaggttcccgaggcttcaggcctggaggagtgaggacggctgttgggttcttga
ttccagcagagggaggctgtgcagggttgcaggaaggacggttgggggcgcttcggggag
gtacgagaagcaaaggtgtttgcagcccttggggccaggcggcgggaaggcctgtagacg
ccagagggcgctcgtgctacatgcaactcaggagctgctggcacccgccaaggagtgctg
agcgcggggagcccaaaccacagccttggggaacccaggaggggccgggcgggtgcagga
cccgcatgagggattccgagagcacgatgtttaaatgttgggggaaaaaatggatcaaag
cgatgtgttcccagggagcccctgttttctcgtttcttttcgtacgcccagctttgcagt
gccagaaagctgttatctcagcactgctaaggaaaccccagcgcggcctcggagggatta
ggcattctgctgaaccagggatatgcggtgggcctgaaaaagccatttcgggaggaatct
ggtctcggctggggtccggccggcaccgtgaacaccacgtgaacaccacgtcggaaatct
gctgggcagggagatttcctcaaggcctcccagggaggagagccacttcctgggctgcaa
agagggccccaacctggcttctgaattcagagggggctgtgtgtgcacgtgtgtacgtac
gtgcatgtgcacgtctgtgtacccatgtctgtggaagtggcacacgtgtgcatgtgtgca
ctcagtgtacgtgtgcgtgcctgtgggtagctccgtgcgcacatgcgtacacatatgcct
ggtgtgtgtgtgcacacgtgtgtctgacgtgtgtgtgctttgcgtgttcttgcctgggaa
ggagttcccggtttgggtggctctcctgtttcttgccgaagccagctgctgctagaaact
ggccccctgctctctgcagtaagagaccctgccctggcccaggtgagggcctggcttttg
tctccaggatcacagcttttgtcaaactccacacaaagagagaggcactcaaaagcacaa
cacaaacacggctagtccgcgcctttggtggtgaacataccagggaattgtcctgcaatg
cctgtggttaaaaaaccccgtgagctgcggccccggaggcctaggggatgaggtcatcgc
tgcggcttcctcccctctgctgaggctccctccgccccgcccggtggcccacccctcccg
ccagctgcagcctccactgcctgggtttctgctgcgccttcagcacacagcgaggcctca
gtttccctcccagctcagagcaaggcctcagtttccctcccagcagcaaagtgagaccct
gtagggagtctctgggcctccgtgacggccctgggcggccctctctgtggaacaaggtcg
ggtcctgtcctcagcgccctggcctccacttgctcagggcgcccgcaggcccgcaggtcc
tcacctggtgtttttcacctgggacccgcagctgctctgatgaggagcctgctctgcgca
cggcctggggcggtttcccgcagcaccatttctgccgctgccgggaaaagacgcagagca
aaggcacctttgcccaggttggggaaccagtgggtgactcaggattttcctccacccacc
ccgaggtctgactccctctgcagctgccgcccgctgagggttgtcttcctccctgcctgc
ctcgccctgcctggtgagctcctatgggtctgacgaagccccgtcctgcacacttgcttc
gggggcaactccccactagactggttgcccagggacgggggtacccactccctcctcagg
gctgcagggtgctctgggaagagttgtgtccctctgtgggcctgtgggctcacttgcctt
tttgtccctgtcacttgggagctacccagctaagaccggtccccaccacccaggccactc
tgaggcttcagaacgcggtcgtcttctccctggcagggttgtttccgcctgcatttgttc
agccagcaaatctttattaagcacctactgtgtgccaggatctatgtgcaagcagcccat
gggctcatgaaaggcagagctggactgagattccgcacccctgggatcctcactgcaggg
ccctgtgtatgtgcgggctggagccctggttcctgtctgcactgagcccctggagctagg
cccagaggacttgacagatgtgggccctctgtctgcacagcccccagggcacggggtggc
ctgcagctctgcccagccagacttcaggtcactgccccatgagcctgtaggagaaacttc
tcactcatctgtcctgagacctgcctggagcccaccccagggagacagaggctctcggag
cctgttcagggtgaaaggacgctagacactggcctgcaggctttgggcgggtaagggtag
cgaaggtgaaagtggaccaggggcaggtggagcagggtaggcccaagtgtctgtctgggg
cagctggggacacccaggtgggctgaacttcagctgccacccagcttcagctgccaaggc
tcctcccgggtcagggtcgacccctgatgtcccggcaagagttccaagaacaaaggctca
gaatccaccaagcggaacttgaagccactgccctgtggggacaggagaagtgacttggcc
ggctctccggagcccagtgttgatcactgaggaccaccggatacaagtccctcctgcctt
cccctttagtgacactgaagCTGTTGAAATCCCCATCCAC
Primer
(+)GCAGGGACCTTCAGACGTG
(+)GTGGATGGGGATTTCAACAG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.