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Mouse element [ mm2146 ]


Position: chr9:63,921,118-63,925,757 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 1110036E04Rik - 2600006L11Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACTAGTCCCCTCTCCAGCAGcttcaagaggctgaattcaacaagcgtccagacacccggt
ccccatgtcctctcacacagggccaggactggaaggaggctttccagtgacttgagtgtg
gtaactctgggccgttgggtttgaagtgccccatttacatttctttcttccttccttcct
tccttcctttctttctttttctctttctttctttctttctttctttctttcttgcttgct
tgcttgcttgcttgcttgcttgcttccttccttcctttctttcttttaagatttatttat
ttatttatttattatacataagtacactgtagctgtcttcagacacttcagaaaaaaagg
atctcagatctctttttttgtttgtttgtttggtttggtttggtttttttcgagacaggg
tttctctatagccctggctgtcctggaactcgctttgtagactaggctggcctcgaactc
agaaatccacctgcctctgcctcccgagtactgggattaaaggcgtgcaccaccacaccc
ggctctcagatctcattatggatagttgtgagccaccatgtggttgctgggatttgaact
cagggccttcctcagagcagtcagtgctcttaactgctgagccatctctccagccacccc
catttacatttctatatacatttttaagtgtatataatatcatttctactcatagtggat
tcattttagaaaccattggcaggtcaaagccaggctggaaccgatggggctcatatccta
gggacttagttttctctgttgcagtttagtgagctagctactgggacatggctgtacagc
caactccagaccaaggctggaggagtggggggtgtggggtgtgaggggcagagccacctt
ctgatgtcgatgttaccctggtttagagagggagccattcacagcctggtaaagtgagga
tcagcctgagcccagtgagctgaggcaccctaagatgttcagattagactctcctgtctt
aaacccaccaccagctcattggcaagtagcaaaggggccattagtggctttaaaaaaaac
gctatgtcctatggatcggtgattgattgtgtgggggtggggttgctgggaattgaactt
agagtttcctacgtgctcggtaaacacacagctgctccactccagtcttggtcccataga
tgaaaatgcaactgagataatgagtaatatattgctttagaatacaatgttctttcaaaa
ttatagaactaacagcaatgaatacttcataactgtaattttgctattattatgaatcat
aatgtaaatatctgtgttttcagatggtcttaggtgacccctgtgaaagggtcgttcgac
atcccccccaaggagtcatgacccatgcactgagaaccactgctctatgctgagcatccc
tcacctgtagtgtttattatgtaacctccacccccaaatggccatatgtattctctactg
atggtcagagaggctgagaggctgagaggctgaggcctagaacttagtggctcatccaag
gtcaggagccatagagtcgccaacctttactctccctggggcctgactcagtcctcagtg
cctgtacttcagtcctcggaagaaggccctgtccggccttcacgtctctcagcatctggc
cagcgtcatcaccaccactgtggccggaaactggtttacatgccctccacagggatctag
ctggtcatatccacactgtaattagaagcacatttccacagtgctgccctactgaaggat
agaacatcgtcaggctcccaagcaaggcctgccagaagcgcctgtcatgttggttctgcc
cactggctgaaaatgtgctttgcccttctccaaccacacaaaccttccctctaaagggtg
ggaagatttcatgtcccagtgtaggaccagcttacaaaatgcaaatggggaagggatggg
gccataggagaaagactgggcctggcagctttgggttgggtaaaacattgtcattgccta
gaaacccaagaggagaagcaagccacttttcttcatggaacttggagggggctcagcttg
caggctatgtgtctccctacactagtccttagacaggttcctctgtacgcagagccgtct
acctgcagaggaccccacttttgtgcaagatccccatggtgtgctgctgggatctggggt
gtctcacacttggggaccctcactcatcctcactggtacccaacagacttgtgggatagg
tgcagggcacacaagctgagtctggtttgcagagggacaggaggagttaaggtccttcag
tatttccagggctgggcagaggacacagatccggaatgggaagccatgtaaactgtctaa
gacttcctggaaggacccaggggtacttccctatccaggaagagagagtgaccataagag
gctaaatgcaaaaaaatgtttttcaaggcttgattatttatttgttgctcctgaatacta
attctttcctggactcagacttggaagtagatgctttcagcgagggcggcctaatgtgtt
cctcatgtttacatagacacaaacacatatacacacatgtacattcacacacatacacaa
atatacagatatacacatacatacacacagatacacacagatacagacacatacaaacac
acttgtacacacataaacacaaacacacatacacaaatatatacagagacatacacatac
atgcacatgcacacacaagcacacacacacacacacacacacacacacacacacacaata
cactggtacacactgaccaccctggatcttgtgtcctgggcctaactgagccagccaggc
agtgcagggcaggagtgctctgtgtgagcatcactcccctgctcctgaccccatttcttg
actgagttgtatgtgtccaaggctccttgaactctcatcctcctgcctccactcccaagt
gctgaaattacaggcattcaccaccatgactggcttctgtggtgctggggtttgtgtgtg
ttaggtgagctctctctacctaccaggctacatctccaaaccccaaggtttttttctttt
catcttctttcctttcttccttttcttttcttttctcttcttttcttttcttgtcttttt
tttttttttaaatatgagcagcctccatgtgacaggttttctcctcagggaggcctttct
caatgacctgggacacagaagagataggacaagcagaatcatcctgtttgtggtgtgtgc
tgactcagcagagtccctaaatcaagtccagacccaggaaggctgccacatgccacttca
gtcccacttagcccttcgttcatctctctgggatgacactggacatttgggcccctactg
ccctaaccacctgttgtcttaagtgtcctcttccctaactgctcccccgaccagctttct
gatgctgtgaagctcatgtctggaatgttcaagccacccctcacaacagcagggcccagg
acaccatttcttttctttctcctgagacagggtttttctgtgtagccctggctgtcctgg
aactcactctgtagaccagactgggtcttgacccacagagatccacctgcctctgcctcc
cgagtgctaggattaaaggcgtgccccaccaccaaccaacttaggacccacttcccaaat
gtctgaatacttgaaaatactgaaaagtggtaaatcaagccaaccaaatgtcatatcctg
gacacgtgtggcaagtgtcccactgaaagtgactaggccttcctggctcatatctagatt
tccagagcacctccattcctcatagggaagatcttacatggagagtttcacccacccacc
cacagcttccccccactttctctatgtccacttccatcaacccgtctagcagcacatagc
ctaatctcctctggggtccctcaggaggatggaccctggaagggggcagtcagagcctct
gagtcagggtgtggctggaagaagagaaagaatcactgtttgagcttgctgttgcagctc
agtctgtgagaaaggcctgtctagaggcagcctcattagtgtctaaggtactactgtaga
tagatccaaccattacctccagcttatagaaagggaaactgaggcccaggaagacactct
gccattagactagagagcttggagctgactgactgggcctaatcagctctgtctgaaaga
ggagagcccaggtccccacgcaggttgccaaggataggtggaggtgggccaggcccacta
ggttggcagactttatgtgaccaaagcagtagttaaggggcaacccctgtcccctcgctg
ggtcccttgagatctaggaagacaagaagcaccctgcccccacactcttcacagacacac
aagcatcctgaaggagagccatgcccagtgatcagaggaagacactgaagcccagagagg
tcgtgtgatgctgcccttcgcaaaattcctcctctggcctcaggttcccaggatgagatg
ctgtggggaaggtggggatgggtgggaaggttactgggtcccaggtttgttcatctcaag
AATTAGCGTGGGGGACAGTG
Primer
(+)ACTAGTCCCCTCTCCAGCAG
(+)CACTGTCCCCCACGCTAATT


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