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Human element [ hs2146 ]


Position: chr11:19,238,352-19,241,998 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CSRP3 - E2F8

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAAACAAGTCAAAGGTGCTGttaaaataatccggagaatgttgacttttgtttattttg
gtaggcaaccaggctggttaagttcataccacaagttgtgtcttgccttctgagggtggt
ggttccaatgtcaaagccaagaggtaaagaaggaaagaaaaacccagtaagctccctggc
atacaagctattcttctctcaggtaatagtgtttgtattctgcccagagattttagttat
aatcagtggaggagataggctgtaatgggcttactttgtcgtgtttagcactagttctgt
aatggcaatttaaatactggacagtgattttcccagatcattagtcatcaaacctagcaa
caaatcagaattaccagagacactttgtttgtttatttacataatttttttgagacagga
tcttactctgtcacccaggctggagtgccgtggtataatcatggctcacagtatcctcta
ccttctaggtttaagtgatcctcccacctcagccttctgagtagttgggattacaggcat
gcaccaccatgaccaggtaatttttaaaatattttttgtagaaatgggtctcactatgtt
gctcaggctggtctcaaattcctgggctcaagtgatcttcctgcctcggacacacaaaat
gctggcattacaggtgtaagctaccatggctggcttcctgggaagcttgaaataatatag
atttaagggttctaccctagacccatctccattagaagcccaagaatctgtcaaagatgc
tttctggtgtttctaatacagccaacctgggactgatttgggggcccaaagtcagggtta
agcttggaagtttgtgaagccctggataagacgatctccagggtcctttccagccctgag
atccttaggctctatattattcagaatatcccattcacaaagatgcttgttaatgaggtg
ccattctattcatttctctcaaaatttcagctgaagctgtagatcacataggtcatcttg
acaaaggtcccagagaagattaaaaatatgtaactgatagcaaggtcaagatattaaaac
caaaaggagaacggatggtctcccaatctgtaagattagtttcatggaaataacaacttc
ttgcaataatagcggcaataaaatttaaatctgccttatatagtgtttgccaagaggaat
atcatgtgtgctcaagtccgaagattagtggtttcattaagagcctcctttcctccctag
gatcagctctttcccatacatttgataaaactcttttggttgagcgcaggttctgcttat
gtgctaggaatcgccagagagtttgaatttgcttttcataaaaatttatttctaaggacc
tcagaaatcatctccttgggatcacttctataaggatgcaagaggaaaccagccctgaca
ggttaagtgccttattagcgagtctgaactggggcttgaagccagattttggctcctagg
ttgtgcatgtcttacttctctgagttgagtcaagtgagatgttggatgcagagcctctga
gcatgttaacaacaacaggtcagatagctgcagttggcagtggctgagctccatgcaagg
catttgtaaagggtgctttgacctaaaatgtttcagctcctggatttgcagctatgaaaa
tactggcaactaaaatggctcagaacttgcaaagtgccaacttgctggcacatcgtattc
tctgggcactgggaagtggatggcccttggctctctctggaaattttttcgccccatttc
ctctcaaaagtgccacatggtattgtatagccagggcttaatcaggtgaagcggaatctc
tatgagttatgaagtaaatgatttcttacagaaatcagatcttacacaattgtgagagaa
actgggggaataaaggttggaaagggctcgttggaagatcggagtcgcaaaccggacaat
ctgagaagctgagcatgtccagccaccacagagggactgtgcgggaggagctggtggtag
aggaatatatagggggttggtgcctctgtgggtctgcatggaagcttctggtgacagggc
tggagcagctgctcttcagcaggacccgccctcaggaggaggctgtggacaaaacctgga
ggacagccaggcagctggagtcagggacacttttgtgtcgtcattgcatcacattgccct
ggccttctgagaggaatggtggttgtttcctttctccctccaacatggtgtgcaaactcc
tctttggtgctcaaaatcacaaccataacatgaaggggttttcgtgaaatgttctggctt
aagcaacttgatacggaataaatcacctcaagtttagagcctgaaatagcaacagcggcc
acgccttgggactaatgccatggaagcactgttctcatttgccatgaacaatctggaatc
agcctgcctcaccacagtctgaacacgcatgacgatgccaggcggcccaagctctggagt
gcgggcctcagctccaggcacagctgcacgcacacgctggcgctgcacagggtctgtccc
tcaagctttctgaaattaacttcctcaaaatggggccaataataactacctcgcaatact
ctttggaagtagatataatagtagatgctcaataaaaattattccttttctctcccaagt
gccacttgttcccctgggtcatataggacctgtcctctttctcagaatgtctccaggtag
aaatgactttatcaaactccaacttgttcaacccgccttattttgctgttgttctgtttt
gtttagttttaggctttgagcagcctgaagctatggtttttagtttctgtctctagtgat
aagcagaaaagaggggtgagaaaggggctttactggttcaactagaaatagaaactaaga
gcccatgagtgtattctctcccttggacgccgctggaagtgttgaattttgataatgaat
ataggtatgtaatttatatttagcattcctggcatttcatcgtggtcctagttgcaagta
ttgacaagttccagtttgttggatagtgataaaaaacactgattggcatgggaaacatct
gccatcaattcatagccttttcctgcaggagagggatggagcccttcttaggcagttaga
ccaaaatctattgacttggacatgcaagatctattggtttagaaaagtgagtttggtaac
atgagttccctggggatccttcaattttcctgggtcagaagagataaattacaattccat
aaaggtattttgccatataggagggaagcaaacatatatatgtactcatgaatctttaca
tataaatacatatctgtacatattcatataaagcaaaagagatgctacatataatatttt
tagatatatgtacttaaagtcatataaaaacatatatacatatacatgtctatctgagat
ataaataatacataaggtaggatagaggggcaagacaagtagaagctgatatcaaagttg
gagacagacaaccacaaaaaaaaaaaaagaacttgaaaaggaaaatattctggagccatt
aatttgaaaaagatgtggacctatacaTTTATTAGCCCCTGAAGGCA
Primer
(+)GGAAACAAGTCAAAGGTGCTG
(+)TGCCTTCAGGGGCTAATAAA


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