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Mouse element [ mm2142 ]


Position: chr9:63,876,446-63,881,152 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad6 - 1700055C04Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTTCCCACACGTTCTCTGAtaccccaggctttactgtgggtgccatatgcctttctgtt
tgaaccccaagcctcccttccttgcaggaccctgacattggcaggcccctcttcctcaga
acttgagataacttgccacacccctagcctagcaccctggggacactccagtaatgttgg
gagaagggaggcagattggaatttctaacagagtcagccagcttgccctccagtctgcat
aagacttatgtccatcagtcctcactctcagcctacgcacaccccacagatgcacttgca
aaggagggctgtgtgctacttctgacatgtgcaaagtctcatccgtaactattattttat
aagaaaagacaggctctgggctttttggtttcactgacagtgtaactctggctgtcctgg
aactcaatctgtagaccagactgaccttgaactcagagatttgcctgcctctgcttccta
agggctggaatcaaaggtgtgcaccaccatcacccagcgataaattgttaaaaatataaa
agaaataagagagaaagcaggaaacctaagggtttgaccacagtggacattatgccacag
gcccatccctgctgtacagagactgaagccatgtccctcaacgctaggcaaggtctctgc
ctttgagcaacatagctagcccactacattattgttcacattcatttttatttttgtttc
atttttgaaacagtgtttcatgtaatccaggctagctattaacttactgtgtagctgagg
atggcttgaacttttgatagccctgtctctgctttctggggtgttttctaagactatagg
catgtgccactacacccagctaaccttgactaaaaagcatgtgtttacagatacacaaac
tggaaatatgcacaattaaaaccaggcattggtggtacctgcttgtcacggagacagggg
gattaacacaactcccaggctatcctaggctaccatgtgagtccctgtctggggacaggc
ctggtaaagaggaatggactcactcttcaacacagaaccatttggtggtctgttcaattg
cttgttatttggtttggttgtactgtagtgttgttgtcttttgatataacagtctcacta
tatagcacagattggtctcaaacttaccatcctcctgcctcagtctctcctgggattaca
ggcagtatcctccaccactcccaactttgttatctttatctttttagatctatttaataa
ttaattaattttggagggcttgtgtgccctggaacaagtgtggaggtcagaatgcaaatt
gtaagagctggttctttctccagtgtggatcccagggaacaaactaaggatatcaagctt
ggctgcaagtgcccttccccaaagccgtccaatagtaaatcgctaatacttgtgcttggt
acaaggtctagatagtcctattcagtaccaaagccacatcctgctctctgtttcctgcac
cctggcaggcagtcccaggtggacacctgtcagttccctccccaagctgaatccttagaa
atagttaaatcaaaagctcaggaatgacaaatttgctgtctaaattattaacagtggttg
cagaaaggaagaaaatcaacaaaagaattgtttattaaagaatcctaatctctgaaacag
tccattgacctgcaaagcaggacatgactcaaatgacaaatgaaatgacaagaccaagca
gagacagaggtaggagctgacgacagtggggcggtacatcctgtctcgccttgcttggga
cttcctgtgtgtatgtcttcctttccagcctggccagggctggcttcatgcttttgtttg
ctccagagcctggtgcacagaggccatcagaaacacaccctatcctcattccgtctggca
caagtcaccttcagagaagggacagaagacagagtcacccacatcctccagagcctggtg
ctggacacaaggcaacattatgacccctgcagaccctggacacctccatctttggacaca
tactttcataaataattgaaaacatatttcacaaatgcattcacataagaaccatatcca
ggctagacttgttggtctctatttatttttatcacgatgtaggcctagtgggcctggagg
tagcctgataagtcctgttcctccagctctggcctctgggatagctgggattacagcccc
gtgtgcctatgatgtaccaatcctactttataggatcctaaggatccaacccaggtcctt
tggtactctaggctggcattctaaccatcgagttccatccttaacccttgtttcttttga
atttaaacaaaactaaaacattctgtaaaggattgtggatggcaggcactgcagacacag
tgcctaatgggtaagtagaccccggcttgagcctgtgtcctgagtatggcttgtatttac
taaccagggatgcttcttaagaacagctgggttcagccaggcagtagtgatgcacgcctc
tgattctagctgtgagttcgaggccagcctggtctacagagtaagttccaggatagccag
ggttacacagagaaacctcatcttggaaaaacaaaacaaacaaacaaacaaacaaacaaa
aaaccagacaaacaaaaagaacagctaggttctggggaaatttctttggttttgcatccc
tgaagacccaagctgcagtctagtcccagaacttacctaccgggccacagccaggccacc
actaaggctgcagtttattaaccctggtaatgtgccatctgctgctgattgagtagtctc
cacaagagaagggatgatgctctagtgggtcaggcacacaagcgatcagaagtctgggtc
ccttgggagaaagaggcaaaaggtggcggtggaggcacaggaagataacattcagctctc
attccactaaggcactgggcctggcctatgttttccagtcacctgggtgttttgaaaacc
attggctaaataacacacacacacacacacacacacacacacacacacaatatgcgcagt
gtttcaggatatttgatcacactgtgaaccccaagattgtgtcaggtactgaataaaacc
tgtttctagctgtggtatggctcagcccttagcacacacctttaatccctctatctggaa
tacaggcatgcccttatatacaccttctattccaaacaactaaggtaaagttagtttata
gaaggaagcacccatgtttgaaagtgacaaagtgatgaatcagagaaagatttgacaaaa
taggatcttcccaactttcacaagaagagagaggaaaaggaagctacttaagtgagaagt
gcagagagagggagaaagagagggggaagagagaggggaagagagagggggaaagggagc
aagcagttttaccaggagagttttacagagataggatggggagagaacaagccagacact
ggtaaagacagaatgagccagagaattcgaaggagccagaagattagaacaaattgctac
agttagtttaaggccatacagagcaattcaggagaagctgagagaagccagattgaccca
gtaggcctggagaagagtttgagccagaacagctcagttgaatcagccaggcagagatca
gaaagaagggatgagcttattcagcagtaagtctgtctcagaggctaaaagcattctaga
cccagattagattgtacggaggctggaagcatccatgattagtcctaggtccacagacag
aggcagtacgcctctgaaatgacagtaaaggcaatgtctacaacccagcccaacctcatg
agtactgagacttcaggtaggagccaccaggcctggcttgaggagtaccaggcaagctct
cagcagctgccagaggcagaatggaactggaatatctgtctctcatggtctttccaccct
cccttctgcagtgctccctgggccttaagtgtgggagtgttttgtagatatatctgttgg
gggaatgggctccacaagtctgcattatgataggctgtggtcttctctaatggtctctgt
ctgttgtaaagagaagtttccttgatgagggataaagactacacttatctgtgggtataa
ggactaaagtttatagagcgttgttaggaattatgctgatttggtaaattaatagttgtg
gattctcctgcaataactgacttcactagcactaagaagttagctaggtttccagtacca
gacatggtttgcctcttgttgagggggccctaagtctaaagagttgttggtcactgccaa
ggtattcgtgtcactactgcacccaccctcagggttatcatgccacactggtcactgatg
cacataggcgtttgcctgcatgtttgtctgtgtatcacatgtatgtctggttccctcaaa
gactagaagtgaatgtcagagtccctgagactagagtaacagacagttgtaaactaccat
gtgggtgcagagatctgagcctgggttctctggaagagctgccactgttcttaaccacta
atccatctctgtagctttctactccttgtattctttttcttaaagacagtctctcaggct
ggggatgtagttcaattggtagagtgcctaccaggcatacacaaagccatgagttcaatt
ctccagcACCAAAGAAACAGGGTGGCA
Primer
(+)GCTTCCCACACGTTCTCTGA
(+)tgccaccctgtttctttggt


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