Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2140 ]


Position: chr9:63,827,347-63,832,004 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad6(intragenic)

Timepoints:
e11.5

Reproducible staining in unidentified abdominal structure.

Expression Pattern
forebrain (5 out of 5 embryos) 
hindbrain (rhombencephalon) (4 out of 5 embryos) 
limb (3 out of 5 embryos) 
other (5 out of 5 embryos) 

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Fasta sequence
CCACCCTGCTGCAGATACAAgacctcactggctccataccccagtaagtgggcacttccc
attaaatgccaagctcttgggcaggccactggatgcccagagatactttgtccctgcccc
ttcctttcctagatttgcagaatttctactatttttttttttttaccaaatccagacaac
agaagcagacagacagacagacagacagtgccacagacagcctgggcctcaggcattcaa
actgacaaacttagaaacagagttggtacatgaaagtcctgagtttgagcactggtactg
aataaaacaggtgcacttaggatcccaacactggaagcagattacaagtgcaatcatcct
tagctacttaaccagtctaggccagcccgaggagatgctggagcccagagcagggaaagg
tttaaagacaacaacaacaacaacaaaaaccaagaaacaaaacaggaagggggtggggag
gaaaagaaagtgagtctcaaagagggccagggactaagaaaacactggggacacttagga
gagtagacacctcttccaagtctctactccagggctttacaaggaaactcctgcggagtc
tccttttcccgataatcctgagcaaaggcaagttaaggagctgagcagcggggaggggga
agcaaaggagggtgtgtgagtgagcgagctagcgagcgggccccctcccaggaaagagcc
ccgagagctaatgcagagagtcagggcagtttccaactctggccttcagatgaaagtata
cccttcaattaaatgttgaaaccgtgttttctcatactaaatcaccgaagcgtttgcgca
ttcctcgaatatctcagggcactgttcatttttatttattgttgtaacccaatgccctta
gcagcgtgaatggtgctattcgagggaaacttgttttgcaaaggggaaagctgtcccagg
tctcttaaaaggttcactatgtgcagggtaactcggctctattaataatccggactgtat
gggcagggcttgcttcccagcgagcattatattttccacccttctgtaaacaggttctct
gcacagatgctttgatattcaattcctccccggctcccccacctccaccacaccactctg
ctctgcgcctactcctcacagaggaggggggagtggtggaaagaaagaaaccaccatgct
cacatattttttcaattaagccatgcttggtgccaaaatatatggatcccactaatagcc
ataagtaatctgacggtcttttcccccaaatattttgattattttacaaatcccccaagg
aatgtgctcttagggtgatttatggtgcccagggaggcttgtgattagagggagggacct
ggctgcagtggggccaggttaggatgtagggctggctaggtgccagggtcaggagaaggg
ggactctcaggggagatggcaggtcaccccctcaagggtgaatccattgaggggtgaggg
gcagtgggtctgaatgggacagatggctgtaatcagtgggtaaggaaatgatggctgagg
aagaagcgaccaccacaaacggtccccaagtccactaattccaaagctcttggattagtt
tctttgttccctttttgctttgagacagggtctcactaagttgcccaaggctggcctcaa
actgcgtatctacctgctgcctcactctgtggcagatgccaccatgcttgctcggacgtg
tgtgtttgtaagtgcatgcatgtgactatacacatgtacgtgtgtacatagaagccagag
atcaacgtcagtgtccttcttcaggagccacgcactttgtttatgtgcgtgtgtgtacat
gtgtgtagactgtatgcacgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtatatacttg
cttgttcatgtcttcttcagctgctatctctctcatgtttgagataatggtccttcactc
tacctggagctcacccattggctagcaagccccaaggaccgccctagtctccgcccacca
gcactgggattgcaggtacacccatgcctggccttactttcatgggtgttggtcttcatg
catgcatagcaagcacttctcccactgagccaccatacttatatgagtgttagggttttt
tgctgaaactttgttgaattaagacctctcactttccaactccttaaaaaattatatatg
tgtgttatatatatttatatttatatatctatttggaggccatagcatgtgcatgaagct
cagaggacaacttgctgacttggaattcaaactccccgtttataatcttcacatgaacag
cgatgctggcacacagatgaggaggtgcccacagccaggaggctctgccagcacctgcca
actcccaaggatccctccacctaagcagcaggaattcctaggtgagaaatgtgctgggac
ccacaaaggccagtctggacaagtagttcccaccatgaacaccttatcggccagaggcac
acagtaacccaggtcccagagggctcaccctgtgtcccctcagaccattcaatctctggc
caggccacgtgccagacacttgccagacagagcagaaagaatctctgttctgtccccttg
gctgagggctgtccctgaagagcaacgggaccggttatattaactagattactctgtgaa
atgaaaattagccagaaggaatgtcacatgttagtgtggttaccccaataactgatgtgc
taaatatcccatcacgcagcatcctggaaaggagcttaaacatacccatcccttacacag
acttcaaaatgatgttgaccctgaaaacctatgtgctttgcagccctgggtccacacggc
aacctgagggcttcaattctgacccataagtttagggaatccaggcggggagcttgctgc
actcacagatggtcactgtctgtcagattcacaggcaagcctctactaagatgccagtca
aattgaagctcttcttcaactgacccctgagcttcaagtcagtcgtgtggccaggcctca
tgggacaaaacccaagatctaaaaaccaaggcagttagtgtatctccctcccacactcaa
aggatatccctaaatgccaccttccccaaaggaagtgactctgtggtaggtctctctagg
tagctttggctatcctgggattcactctgtaggccaggcttgtctgaactcacagaaatc
cacctgcctctgcctcccaagtgctgggactaaaggtgtgagctacatacctggtaggca
aacctgggcttgaccttcaacctctgatcctcctgactccgtatacccagcgttgagatt
acaagtatatacctccatgctcatcttacgtggtctggggacagaacctagggctttgtg
catgctaggcaagcactctaccaattgggctacagctccagactcagaagtgacatttaa
aaagttacttatttgtctctgcatgtaggggtagtttgcctgctaggtcttatgcaccat
gtgcatgcagtgcttatggtggccagaagagggcatctgatcatctggacttggaattac
ctttaggtggctgggactagaacccgggtcctctgatctggacacggccctatcctagcg
caggtaccaccccatcccagggctaagcaagagaggaacagcaactgcgtgagcagctaa
caataggctgccggcagggaccttgacgatgtagaacaaagagccagcttgcagggagga
agacctttactcccagaaactcacgtgtcaacctagctgcatcctacgtgtagccccaca
ggcctttttggaaggtcccaagttagccggggacagaaagtctccagccttgtaaacatg
cgataggacaggggtcataggctgtatgcctgcatgtccccttctcttaccaaatgcagc
tgctccattgaccccctgaaggccacagctcctgcttggacctggcctttgactctggct
ccaaaccgggggcaggaagtggtattccagaacagtgccaccgggccatggagggacttc
aaggggccttcccaccagtcggcatgagatcatcacaacaaataaaagcagatgtgcaaa
gaactcagggagtatcggctaccaactgttccctgcacttcagcatgcaggcccagaaaa
ggaaatggactcacccaaggtcacacaagaagctggaggcagaggctgtacggctgctgt
actatagtgtacttgcctggcctcgacactgtgtcaagtgccatgagtaagggcaggtga
cactttggggggaggagtaggaaatgaaaggagggagcctttgagagctgctctaaggga
ggctactgagtgggtgagaaaggggtcctctggggagtagggaccctaggcagaaggcac
agcagcctggaggttgtagaacatgggtctggggatggggcgagagcaggctaaaacttt
agatttcaaaagcaggatgcttggctggggcctctcttcccaaacataaacagcacacga
tcttattcaaaaagagggatggggggaggggctggctgtcatgctctctggaggtggaga
ggcgaggtaccaggaaccAGGGCTGGAGAGCAAATGAC
Primer
(+)CCACCCTGCTGCAGATACAA
(+)GTCATTTGCTCTCCAGCCCT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.