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Human element [ hs2139 ]


Position: chr1:237,192,467-237,195,956 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MT1HL1 - RYR2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGAGAGGAAAAATCCGAGTcatatgtattgacaaatttcagttatttacctttttaagt
actgagcaggcattggtctcattttggagatttcgtgcaggagaattttggatattaatc
aaaataataagttacatatttagagaaagaataatctagaagtctttggaccgataagcc
taacctgtctatcaggaaagagactggaagaaaataattgtgtaactatttgattaatat
tttcataagaacggcagcaaacaggatggccttgtaaagaacaaatcctgtcagactata
acttcctcttctgacaaaatgagtagtcagctggattgaaggagaggtaatagactatct
tcactttgccaaggattttgatttctgctcagcaagcaaatacatgagacagttttgggt
agtgatgaccaatttagaaggaaataaggcaaggtaatgagggggaaagtgatgagtgaa
ggctgataccttagaaatggtggtcaggagtctggatgcggtggctcatgcttgtaatcc
tagcactttgggaggctgaggtgggtggatcacctaaggataggagtttgagaccagcat
gaccaacatggtgaaacaccgtctctactaaaaatacaaaaaattagctgggcatggtgg
agtgcacctgtaatcccagctacttggaaggctgagtcaggagaattgcttgaaccccgg
aggtggaggttgcagtgagccaagattgcgccattgcactccagcctgggtgacaagagt
gaaactctgtctcagaaaaaaacaaacaaacaaaaaaaagagacggtggtcagggaggcc
tcttggacaggatgtttcagccagcatccaaatagtgacaaggcaccagtcatgtgacct
tcccagggagagtgctccacagaggagggcttagtgggtggccttggccagtgcggttaa
agtgcattgaataaagggggcgggtatgggataatgagaggggtgggaaagaacagagaa
gcaggtccctgttaggtgtgtgattgagggcatggattctactcaaggacaaagagaaga
ggtatagggggactagaccgggcagaggcaggagagagaggctttggaagcagagcagag
ggtagggggccttggactagggcactggcaatgacgtaattagaagcatccagatttgag
atatatttagaagtaggacttgctgatggattagacgtggggagtgagggaagacagtta
atccaaagatgattcctgtgtctttggcttgataatgaggcaccatccactgagacgggg
aagactgaagaacaagaggtttggggaagagatttgggagatgggggctctgtctgggaa
acgtcctatttgagctgtctgctgtgcattcccatggaggggctgcgtagatagttggat
ataattgtagagcttagggggagaggtggacgctggagataaactagaagtcacagccta
gtggtgatatttggatgatcttatttggattctcacaatttctctggaggcagttataaa
aaacagtagatgggtggggggcagtggctcacccctgtaatcccagcactttgggaggcc
ggggtgggcggatcgcttgaggtcaggaattcaagaccagcctggtcaacatggcgaaac
ccagtctctagggaaaatacaaaaattagccaggcatggtggcgggcacctgtaatccca
gctactcaggaggctgaggcaggagaattgcttgaacccgggtttaagttgcagtgagct
gagatggcgtcactgtactccagggtggggacaatggagcaaggctcagtctcaaaaaag
aaaaaattaaattaaaaataaaacccagtagatgatggagggtacgccattcacccacgg
gtggccaggcgtgtcggcagaactcaaggcccaggaagaaaaagagcaacaaggaggaga
ggtcagatcaacaaaggggtttccagggccctctgtgccttgagcaaagccttaccagag
gaacaaacaaaagtatcgcaagggacatacttacactaagaaattattggtggcttctct
gaaatttaaatgtatctgggtgccctgtcttttacctggcaaccctacctcaacatcaac
aaagggttgaagccttcttctttccccagagttcctgcaactgcagccctgctttttagc
atgctgtgctgtcatcgctttgcaccttttttcagtcagacgttgtgtggttcctgaagg
caaaccttgtgtgtgttacgcacctttgtgcaatcgttacattgaaagaccagagttcaa
cagggatgctgaaagcaactgtattcttttctctctctgtccctttacaaccatttagag
gcttgtttttttgcctggaggacattcctgtcacttttagtcacgagcagtcttgactcc
atgctggaatgttcagtccagtttcacaaccatgactttaagcttcaaatagaaagtgtg
tctccttccagagactgggagcatctggctgaggagcctaagactgaaggatggactatg
aggtcagcttccctttaatttccctcctttgagccgctcctcctcgcaccccaaccaggc
tgctttcaccttccagagctggaggtggccactgagagtgaggctgagagcatagcagga
atggtcttaagttaccagcattgggaagatctttgaaggtgattctttctctgagtgatg
ttttcaggggttgctcaggggacccacccctctcctcttcagctccctacaagtgctgat
gcctcccgcacctcacctctccccagccccggcttctgcatcttcagcacgcctccattc
agtctctttgtgctgaggttatccagcccctggcaggaagctttcttgggtaggcacctt
taagacgcctttaagacatcctaggttgcatgccataaccggtctaagggaaatacttcc
gtctgcagtctgtgtctggcagctagctcctgctgtggttgtgtatggtcccccaaaaga
gccacttactatttgcatttctcaggcatgagtcagatagaaatctccaggggacccata
tcaagctttctgtgtagtctccttgcagcctgtcttcctggcttgaggcgagtgggggat
gcacctcttgtgccccctgcgtctcctccctgagatggggtgggtggggttagggataaa
gacagcgctccaactttctccaaagaaatcatctctctcagccacttctacctctactgt
aagcctcaaaatcagtttccagcaccctctctgcaaaccccacataggtgtcctactatt
ctctttagaatgtgggagcctttgctacctgttttattgtttttgaccttttggtgcctt
agctgaggctgagaagagaaagtgccatcctgttacatttgtatttttagCACCTACCTC
AGTGCCTGGT
Primer
(+)TGGAGAGGAAAAATCCGAGT
(+)ACCAGGCACTGAGGTAGGTG


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