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Mouse element [ mm2138 ]


Position: chr9:63,800,744-63,805,621 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - 1700055C04Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCGTATCCCACCATACCCTGtcagctccctttcctgctgactccctctgcttcagactca
ataaatactgaaaccaagttcagtttggccccaaaagcccactgaagccctgaaggttct
ttgtaagaaagaaaaaaactataatgcaaacactttattatcaagagtgactggtattag
tttttttgttttttgttttgtttttttttggtctgggcattaatattttttaaaaaagcc
atacaccaaacctaggctttccacctagttctactgtataattctctttaaaaaaggaaa
gagggaaagaaagaaaaaaatatatctgtattgaaagaattacaagccaaagtgcgtctt
tcttgtttctccatatacacacattgcaccatatataaataattacgttgtaaaaatgac
tccataattacaagtataatatatatttccatataatatataaaactttatattaaatct
aggtagatgatatctggggggagggcgaggttgtccctggggtggtgtctctgggcgctg
gccccccagaggttgggggacgctgcggcacagtggcagccgcattgctatctgtggttg
ttgagtaggatctccagccaacaggggcaggaggtgatgaactgtcgcgagtagcagggt
ccccagcccttggcgaagctgatgcgcacactgtgcgggtcgtaggggccgtgagcggcg
tctgcgtgctgcagcagccctgagcgctcaaagtcgaacaccttgatggagtaacccggt
ggcaccttgcgcacgaccagggcgcggcctccgggcgcatccagcgtcggggagttgacg
aagatggggtgctcgccccggttgtaggcccacacgccgtctggctccttgctgagcagt
atgccaaaaccgatcttgctgcgcgtgcgccgcaccgactcactgcgctgctccaggttg
agctggcccaggcagaagccgctgccctgaggtaggtcgtagaaaatgctgacagcctgg
tcgtacaccgcatagaggcggcccacgcgtgtccggtgctcccagtacgccacgctgcac
cagtggctcggcttggtggcatccggagacatgctggcatctgcaacgcaagcataggat
atggcaaggttattgctgggggagagggggggaggctgggcaaagttttccaagatcaac
cagtatgtgagcaaccactgtgtgccaggctgccaaataatttagcacacagtgggaatt
tctctctctcaaaaaatacgttttaatggggggggggggcgcggtgagagcgcactgaga
atcaaacctcttcaagtttggcaacaagcatctttaccatctcattccgccccacatagg
atgatgaatctacagtatgcaaaccagagtgcctactgtgtgctagcccctgggacacaa
agatatgaaccacatccagctcctgtccactataattttacaacaactaggagagataaa
caccaacaagcacaatctaccaagcaagtgtagcaatcttagaagaccccatctgcaagg
tcatcatgacctgcccaaggttcacagaggccaaactggaatgtgattcagacccctcag
tccaggactttaccccaacagagctccctcaaggggctggatccagcacaggtcagaagt
gaggttgggatcttacaggaaggtttggttgcacacattgctagcctttgatacataacg
ctatctggcacggtggcatgcacttgctgtcccaggtactcaggaggcagaagatgcagg
atgtttcaaaccagcctgggcaagcatccctccccctgttcccccagaagaacactgatg
gcattcccctgcctcagacttcctgtgctccttaaccaagttgactttcaggtttcctga
ggcccacaaccaccaccttacttgtggctgctaagtgctattttaaaaagtgggctttgt
ctgggtgatggtggcacatgcctttaatcccagcactttggggtggggggcagaggcagg
tggacttctgagttggagacagcctggtctacagagtgagttccaggatagccagggcta
tacagagaaaccctgtcttggaaaaaccaaaccaaaccaacaacaacaacaacaacaaca
acaacaacaacaacaacaacaacaacaaaagagggctttgttctccaaaggatgtgcatg
gatgtctagttctgggatgtgtcctgctccactccggatctcagtttccccactgtatag
caaagcagtgacctgcactttgtctagatgggcctgaaacatggccccactccacttggg
gggttttcacacatgtggggacctgatatagccaagtctgccttggaaggcagtctcgga
gctcttgttgttgggcatagcccacttctgagatgaagtctctggcatcctatctttgct
gtgggcccccacctcaccatggctgtccactgaaattatatgatctgccatgcttgcttc
tggccggagccttctgagcacagaacccacgttcacccagctcctcccaggggacttgtc
caacaaccaacctaaccttggatgagtggctttgttcattaccagtgccatgaggccagc
tctgcagccttcacttaagtcctgagtctccagagggccctggaccctcttttcacacag
agaaggctgcctggctgctacctcggactgcacagggtctctacgaacaggcccgttcat
cactcaggagccagccacaggtccctcagtctgaggacagtcaaatcttcacaccaggca
aaagctagctacagttgaggaggggagtcaaggggatcctggctatccccaactaagtgc
ccttggtgagtgcacatacatagctcaagcccacggcaggagagcaggatcagcgaggtc
ctgaactccatcctgccaagccactgttcctctcaatacccatccacctggcgcaggctt
gggaaacttgagggccagaaaaacaaggccgtgcccactggccatgagcttccggtactg
ctcgcagccagggagacttcctctagtgagccaggccaagtgaggttaagaagctgtgtg
cagcaccccgaggatgctgggagcagagctagggtgggtaccaggcatcgctgggcccct
cctatgagctaggcactgccttcacgggtgagggaactgaattcccgattgcgcacccca
gaattctggagccagcctcacggagagggcaaacctttgtgtgtgtggtgccaatgatga
aatgcagtaccctttctctcctgctgagctacacccaggtcccaagccagccacactaga
gggcgctctcctccatcctcaggccagtagttcttaatcctgatgcgagaccctttaacc
cagttccccacgctgtgctggtgacccccaaccatacattttcattgctgctttttaact
gtaattttgctactgttatgaatcctaatgtaaatattttttggagataagaggtttacc
aaaagggcagaatgtcaggcaggcgcctcattaaaacttcactgggccggtcacttccct
tctctgagcctcagtttccctatctgtaatagcaactgctgtaaggacctacgagtcccg
tgggtgcttacttcactgtctcactgaggaaagggactactagtttcaaagtagccttgt
gtcaaggtcaaaatagcagcttcaagtcagagagtgtgcataggagccataggcagggag
ggaacactttcttcttgccaatgtctagaaggctttgcagctaggagtccagtggggctt
accgtttctctcaggtacctgtttgatccctagcctggccacaggatccttcacagggat
gttgccatatgcctctgatgtccaggctagacctatctccaaccctatggaaattaagct
gactggcttccaaattctgctgccctgtaaggccctctctttacaacagcatcctctctg
ggtctggaccacatgcctactgtgggtcagtggctctggggatagcctactccccacata
tgaacaaagggcctcaggcctctcggggtccttctccaaggctgcaaatatcccggggac
tctgaacacactaaagcaggggaagaaaagaaataaaactcatctcaaatgtctgtgtat
cttacacacaggaagcctgatctgaaggtgggctcaggtctgaggacagtggaggggttg
tgggcaaggacttaaaggtaaccccctcagctttagagctcctcaggatcacctcacctg
gcagggatacccagggctccctagagggagtatgtctctcccccgatcccgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagaggga
gggagtgaacccaggcctttaggcttgcttggtaggagctctaccactgagctacaccca
agcccaagccacacgtttaaatgggaatagggtgggtagccatggcactgatgcccaagc
cccacgtttaagtgggaatggggtgggtagctacagcactgatcaatctgcttggttttg
tcctgtgggtatttgttttcaaacatttcctcctgacacaaactaaagaaaccttggtct
agagaggacctgtgggttccacacgtggacctcagtggccttatctctggaaggtggcac
ccgggttataatgatttgcctgaggccacccatcagagatggcaaagttgggactaggac
ttaaaatccttgaatgaggtaaacacatggctgcagccacctgactggcaagcttctcCA
TGTACCCAAACCTCGCCT
Primer
(+)gcgtatcccaccataccctg
(+)AGGCGAGGTTTGGGTACATG


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