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Mouse element [ mm2137 ]


Position: chr9:63,769,520-63,774,183 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGCACCATCACACCCTTACtagagcagttcttacaatgcattcatcagccgccaccata
cacctaagtaccacaagccaggatggcggtgacagagccagcttctgccccagatacata
tatagctctgtgaaaggcagagagagccatagagccacaggaacaaggaaggaaggtcag
gtcttgggctagaccagtgtcatggagtacgaattctagaattttgatttccttaaaaaa
cacagaacgactataagaatatgctttgttttaatcccaggtgtgagaatgtggggctgt
gttgcactgtccgcagcagctgactatgatttgtctcatgctctagcagaggcatggttt
tgccagctgcagagagtttctgtgattatgtgacgtttggaattctgggaacttttcagg
gggtacataaatactagagccggggctggagagatggctcagcggttaagagcactgact
gttcttccagaggtcctgagttcaaatcccagcaaccacgtggtgtctcacaacatctgt
aataagatcctacccttttctgtagtgtctgaagacagctgcagtgtactcgcatataat
aaataaacaaatctttaaaataaataaataaataaatactagagtcctgataggtggggt
tggtggttgttgggtggatgtggggcttgtggtttgttagtagttgtactcaaagaagaa
ataaaaggaaagaaattagattcagatctgtccctcggtctccttctgtctttctgtgtc
tctgactctctttccactatcctttctctactatctagtgatgggagtgaaactggggga
atcggggagtgggaaaaagaagaatcctcaaagtagctaagtcaagctccattgttatct
ctgatcctttccccaggccacctcctcactcctagtagagcaccaggctactcataccaa
gacgatactaggatacagggagactgtggagataaaacagggggctaggcgaggaggtgg
agctggactgtgagcctgagggagggctggggtggcagggttcaccctctacagcacctg
gtaggtcatcattaatccaccgggcgtccccttcagagcaggggatgcagacagacgcca
gcctgctcacaggatgggcctgacttggcctcttgccctcccagccacccagagcttgac
ctgaatctgctgcatacgactcctctgaccttggtcaagtcactcttccactctgggctt
ggaacattaatagggaaggatggatgggtagtgaaggtaccttgcagtcacatgggtagg
gtttggcaactccttgcttggccagcctgagacatgcacacccttcccccggcctagctt
tggggaactctgaccaaagtgtcacccctaattccgagatctttactgcccaccaagcct
ggagacctgatgccagtggatggtgacatatgattttaagtactttgtgctcagcaggaa
gcaaaacaacaacagaagaaaacaaaatcaaaggaacccaaagcccaacagcacagcacc
gggcaacccagagccactcagctgccagcagccatagcagcgacagcagctaatgggaga
gtggacagggcaagggacagctttctggaagacagtgtggagttactctggagtggtgcc
aggaggcaggaacgttcacaagcacccatcctgaggaaggcatagccgcagcctccctca
cgcttacccgcccacacgggttttctggattatcctcttgttcagcctttgtatgaactc
cactgtgtatacagcaggcatgcaaatgtgtacgtgcatatccattaagccattacatga
tgccaatcaagataaaacacttccagtgtgcctgacgcttctcttgagcctccttccaag
cagctccctagaggagaaccacagactcagctctcaccataaactgccttgtctgctctg
gaaaacactgatggaggcttgctacctagtcctgtgtctctggttccttcactcagcaaa
atgtcagactactggctcatactgctgagtctatgctagtgtctttcatttatttatttg
cttgggtttttggtttggtttggtttgtttttttgatacagagtttctctacttagccct
ggctgtcctggaactggaccagcctggcctcaaactcacagagatccatctgcctttgcc
tcctgcatgctgggattaaaggtgtgtgccacagcacccgacttggtggtttcttttaaa
atgttgactctgtttaatattctgtttcgggacctaacttctgatatgacctttctggtt
tcttccttctcatttttctcccccctcctgcttctccctccccctcctcagttactcccc
cctcacctcttgtttgttttggtttgagaaagggtctttctagcctagcctaacctcaag
ctaggtagccaaggatgactgaacttttgacccagctgcctccacgtcctgaatgctggg
atcagaagcatgtgacaacacgtctgatttatccaatgctggggattgaacctggaacct
tgtgcatgctaggcaaactgagctgtttctccagcaacttgattttgtgttttcagggtc
ttactttgtatccttgcctggcctggaacaactcattaaacaaaccactctggcctcaaa
cttgtgacaagtcttctgcatcagctttcttgatgctggaattataggcatgaacacagc
acactaagctctgtatatgtatgtgagtgtgtgtatatgtgtgagagtgtatgtgtatga
gtgtgtatgtgtgcttatgtgtgagtgaatgtatatgtgagagtgtgtgcgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttagacagtgagacagtgtctccc
atgtagccctgactctcctggcacttcctatgtggcccaggctagcttcaaactcacagt
aatatacctgccttagcctcgtgggagctgggattacagatatgtaccataatatccttt
cttttgctgagaggcaccagggtggatcccactgggagctgttgtgaacactgtcaacac
cctgcctgagcctctgggccatgtgcatctcagtccttcaactcacatggcacccgagtg
catgcaggctgtcctggatccagagatttctgcttctagcatccgttgggatcgttggct
cacttatccacctttctgattctattgtgttaaacagctggagaagccccagatggtggg
ggtacaggagtacctttagcggccactccatttggagtaagtggagctatcatctggctc
cttcactctagccacagagtctccccttttccccctgcccttgccacagcactaggcatg
ctcctgcctctaagcccagacccttgcagagccttctttctgaacttgtcatccctgaca
tccacatttcgaaccaattggctgtggcgcttgcctgacccagcctggcagatagcttac
ccgcaacatacacagtccctttctgtccccttacttttgtcccaccgtgtctgactggcc
agccggctttgtgttttgtacatgttcacttattgcctgttcccactcagtgatatgaac
tgtgaggctgggcagggcccctttctgctgctccactcccacaggatgacatctggcagc
tggcacatgcttcagaagtaacttctgagtgcaagaatggataaataaaagcaccaggca
cgggcactcagtgcaggcacacactagagaggtagaggtaggaagatcaggagttcaagg
tcaccctcagctacagaacaagttccaggccagcctgggctacataagactgtcactggg
gttaggggtgggggtggaaagctgccctgtggagctgggtggcaagcatcaccagtcaaa
acaatctctggaggccattcttagtattcttggttactgacatccacgtctcaaggaaag
actccagaacactggtgtatggccctggggtaaagtcaggaactaccccggtgacctcta
cgtactgtcacaactcggacatcacagtaggctctcaggagacccagagcagcacctggc
ccccatgagctgactctttatgatagggtcttcaggattcctaggtgagaagaggaacct
aggctcccccaaatgactttcacttataggggaatagacgccttagtttcccccacttat
gaagtgggtggagttaagtcatataatacacagagaaatggtcccagatccaacacctcc
tagcccagctggtaaaaccctgccctctctggtcttcaaatttcccagaggtcgaggatc
gagcataacccatgactgaaggattgaacagtcccttagttgtaaagtcaagtcacagat
tccccatgtcttctcttcagggctttctgtctgctggagtggctagcttgtgtttggtat
tttgagacggtgtcacgctccaggttgtccttgaacttatgatcctcttgttcccacttc
ccgagtgcttggtttacaggtgtgccttccatatccagacccctgtcttttttttttttt
ttttctcaagaaaagccatatttcCTGCAGGGTCTAGGGAGAGT
Primer
(+)TGGCACCATCACACCCTTAC
(+)ACTCTCCCTAGACCCTGCAG


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