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Mouse element [ mm2135 ]


Position: chr9:63,747,249-63,751,983 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTCAGGCTTGTGGGTCAGAAacttgtgtcctaaatcatactgtctccggatataccaaca
ctgggaacatagacacctaggtgtggtggcacacacttgtagtcctagtactcaggagac
agaggtaggaagacccaagagttcagctttgtggtgaatctgaggccagcctgggctgct
tgagactatgtctcaaaacaaaacaaaaaaacaaccaaccaatcaaaaaaattatgctca
agtagttatggatttcaaagtaatgtttatataaacttgtctatgctagtaaaatgataa
gggatacggtccacactatcccaaatggctgtttgatgaattcacaacataatacaaaac
tttcacatgaaaagaaataaaaagcaattttaataagcaggaaaaaaatttaatttgggg
acttgctaagcattctgaccaaaaattttcaaaatggaacatgtcattttttcccccctt
taagttgctgttttcacccaaacacgtcttggaagacgatcatatcacaaggctctgctg
tgtccatcctcacacacaggtgtgtcacacacaggtgtgtcccaggttagccatggactg
tgactggcattttctgcctctctggttgtggctaaattgttgaaagaaataaaaaaaaag
atttaaaaataactgtttatgtgtgtgagtctctgcctgtgtgggtctgtgcactgcatg
catgcctagtgcctgtggaggtcaaaagagggtgccaggtcccctagaactggtgtttac
aagtggttgtgagcgccctataggagttggggatcgaacctggatcctttgcaagagaag
ccagtgctctcaatggctacactagctctccagcccgaaccttgataatctgaagttgag
tggctgacaggaaccaggctccgtgtcacatgtttctgcttatatgaaacatctcagatg
ggcaaaggcagggagagggcaggtctgtggtgccaggagggagtggaggacaggagggcc
gagcaagggcctcccagagcttacaatggggtgacagaaagaccctagagctagacagtg
tggcactcacacaacattgtgagtgtacctaatgccactagtttgtatcctttcaaacgt
gaaaatggtaaactttattagtgtttcaccatgtagtgaggcgactgagatggctcagtg
gataaaggtccctgtcaccaagcttgatgacctgagttcaatccctgggtcccacatggt
gggaaaagagagccaacttccctaggctgtcctttgacttccacatataaccaacagcac
attaacgccaataaatacataacataataataaaatttaaataatagtaaatgttttttt
aaaagaacatagaactgctgtggggaaattactaggtcttgactgagtcatagagaaata
gtctagatgctagaaaaaaaataattccttttttaaagattaaaaataaaatctgtatgt
ctgtccagggatgtgcataaggatgcaggtgtcagcagaggccagagacatcaggtttcc
tggagctggaatgacaggtgcttatgagcttcctaagtgggtgctgggaactgaacccag
gtcctttgcaagagccgtctatgctcttaacccctgagccatcgctctggctgctcatta
cttgtcttgctgtttcttcactcagaaggttgcatgaggtcactggctctgttagctgtg
tcagcacactgaaaaactaattacttcataataattattaattagtttaggtcacaataa
aagtaataatgaaatgccgatatcatttgtcctggttagggttactattgctgtgatgaa
acaccatgaccaaaagcaactcggggaggaaagagttaattctgctcacagctccacatc
actgttcatcatcaaaggaaatcaggacaggaactaaatgaggcaggatcctggaggcag
gagctgatgcagagaccatggagggatgctgcttactggtttgctctctccatggcttgc
tcagcctgctttcttatagctcccaggaccaccagcccaggggtggccccacccataatg
tgctgggccctcccacatcaatcactaattaagaaaatgtcctaccgtcttgcctacagc
cagatcttaccgaagcattttctcaactgatgtttcctcctctttgataactctagattg
tgttaagttgacataaaatcagccaggacactgatcatcaaggatttttatattaatttg
tattttaaatttttaaaaatactactttaaatattatttgtctagactactagtgtgtgt
gtgtgtgtgtgtttttgtatgtgaaggtttgtgcatatgactgcagtgccaagggaagga
ggccagaggagaggctcagatatcctgaaagtggagcttcaggcagttgtgagttaccta
agataggtgctgggagttgaacttagatcctctcgaatttggatcctctgtaagcccagt
acatactcttaactgctgaaccatctctccacctccgcagtttgctttctgttgctgcaa
taaacacaatgaccagaagcaactaaaggagcaaagggtttatttcagcttctatttcca
ggtcccagtgcatcagtgagggaagtcagggcaggaactggagcagaagtcatggaggaa
tgctgctcaccggcatgctctctgctggttttcttacacagcccagcccatctgcctagg
gatggtgctgcccacagtggaccctcccacatcaatcatcagttaagacagttccttaca
aacatggccataggacaggctaatggagggcattttcagttgatgttcctcctccccaag
tgactctaggttgcaccaagttgacaaaaactcaaccattctacatatatacatacacat
atacatacacagagagaggcagaaacagagacagaaccgtgcacaggtggagcagtcacg
tgcctctatctcaggaaacattcagaaaggcaggatagcttgcttgaatctaggaatgac
acaaagaaccctgatagcactaaggaccctttggaaaagccctgtgatgccacccctgta
gcatgtagtttctactaccccgctttaagctccaggaggaccaggctgccagccccaccc
atgtttggctgaacactagttatagtctcataatcaaactcaagttgtttaacattgaga
gagaggctatagagtggaaaacatggtttttagatggagttacaggttaaaatctaaaca
taacccggggatagaatcatgattctttaaattaggaatgatggtagagtactttaccta
atcgacacatacgatgggctggatgctaattgtatatcatactttgtaatttacataatt
gttacagtttgttcaatttatatctgagaggagaggctttggtttttttgtttttttaat
tggacagaaaagttgagatgtagggggtggttctgatgctaaggtcctgttcaccaattg
attcttgatctatcagtaaagatgccaggggctaattactgggtggaaggaaagaggcgg
gacatccaggtccccacaggcaagctgagagactcaggaggagaaaaggagatttcttca
tgcttcagagggagataaggtgaccagccatgtgagatctcgagcagagcagccatcggc
cacttccccaggtgggagatagaaacacaactaaccagggcagttttgggttcctgaaca
aggagacagtgaccaggacactaagctaagggcagattaagaaagagatgctgagctagc
tgcgggagatgagaagtgcccagcgattgagccaataaggccggttgagattgagctctc
tctctctctctctctctctctctctctctttctctctctctctctctctccatgcatgtg
tgtttcatccatggatccaatattctctgggcaggggctggtagccgggtccggagctta
aagcagggtagcaaaaactacatgctacaacccccatatttctttcacacaaagaaggaa
ttaactcataattttagttgttttggagagcttctctgaaatgttgttcctaactaactc
agcatccaagcctccttacccaccaaagccagcgcaggtatctgacagaaacactcaaaa
caggtggcccctacagaggggtgactgtcctcactccatgtttcccaacccatagtgaag
agagacagcacagaatgtagggatcatgaagacggaagactcacatcacaaccacacagg
agtgagctaggatccctctcctacacggtgcctggatcctcacaccctccacatggcact
tcccatcccaggggtggctttgccacactaacactcgaataacactcaaggggtggaaag
acagctgctctctctgcaaaggacctgggttgcattcccagcacccacatggcagctcac
gaccacctgtgactccagtcccaggagatctgacagcctcgtcttgtctctgtcagcact
gcacacacatgatgcacatatggacgcatgggccaacattcacacatataaaattaaagt
aaataaacttttaaatattatatttgattcccactgtagtgcttcctccagtggagggga
gcaggggagaggggtcatggcgggtggggaatgaaGAGAAGGTGCCTTGAGCTGT
Primer
(+)GTCAGGCTTGTGGGTCAGAA
(+)ACAGCTCAAGGCACCTTCTC


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