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Mouse element [ mm2133 ]


Position: chr9:63,711,777-63,716,558 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGCGCTCATCTATCTCCCCTgctaaatattttattttttccgtattaatggctgcaattt
cagcctgtgcctgtttctgtcattaacactgtacaaacttaatatcattagtagtttttc
ccttaattatgtgactagaaaagaaaaacatcaaagtttccgtgaaattggaatagtata
tctaaattgtctcatgtttattttaacattaacagtaaatgaagctaatgggcttttata
ttattaaaagcactcatttgtgtcttgcctgttccaatacataacaaagctttaaaagat
gttaaataattagttatttaatagggacgggtggaatagatcagaacagaagggaaagtt
gagggcagctaatgcaagctgtctgtcgaagggtctgtccctttcatagctggcgggcgg
gattccctctcctcacgcctgctgacctgctgttacaatgatagctctaatttataatga
ccctgcagtgttaaagcaacacaatctatcgctgagccctgcggaggatacacgtgtggg
ttggggtgggggaggggggcagtaacatttgcagttatttctgagcaatatccattcata
attcaacacctgtgtatagagtgtggctggagctgctgctcagaccctgctgggctgggg
ctccagaggccctaggcaggaggggaggccggtgccccgctgtgctggcccgcatccccc
tgcctcccacctccctgcctccttgcaggggtctcctcgctttggaggctgccttgagta
gagacatttatcttaggagcccagggatacctaggaagactctagctggcaaatccattg
tcacgctgatgctcagaatcgagtaatggggactaggagtgtagttcagttggcagagtg
tttgcctagcatgcctagagccctgagttccatccccagcactatatacacaagggttgg
tggggtacgcctgtaatcccagctttcagcaggtggagacagaaggatcagaagttcaaa
gtcatctgtggctacataaggagtttgaggacagcctgggctaaatgagaccatgtctga
aaatataagcacaaagtccaaatagctcagaaggagtccctgaggtctgcagtgtcccct
gacgctgaaggccctgcctgcacaataccagctcctgttcgtcccactgggattcaccta
agtttgttctctgcacccaacacaagccactgtgcttggcccctgccttccctcctgctt
tcaccctccctcaagtcccctttgttctctctttcccaccccctgtccttcctgcaaact
taaagtgtcctctgtgctgaactcctagaccaacttctccaacttgcaccacagtaacag
aaaggacttagcacagcaccctagaggtgttgactcccagaccttcaatgaccaaagaac
atgtagctctgacaagtcaccatgtaatgtggacgatgccactctggggacaggctttga
gacactttcagctcagccagtgacttcatgtctttaaatgacaccatgtctgtctagagg
cacatgcccaagacttgtcccctcaaacagatggcaaatcccttgaaggttacagctcca
tggtcttcaaaatgccaccagctcagggacgggtgtagaagctgtgagtttgcagggacc
tgaatggttggtactgcagtgtttctgttggtcctcagagaggtgagggagctgaagctt
aagaagatgaagcaaaccaatgggagggggttgacactaatgagcattaaccaacactat
ggagataagccagaagagggtcatggatcccctagaggagttacagatcattgtgagcca
ccattcgggccctaaggattgaacccaagttctctgcagaaacaagtgctcttaactgcc
aagccatctgtctaagtcactatactggctagttttatgtcagcttgacacaagctagtc
atcagagaggagcaattgaagaaatgcttccataagatccaactgtaaagcattttctta
attagtgattaacagaggagggcccagcccattgtgggtgatgcatccctgggctgatag
tcctgggtactataaaaaagcagggtgagcaagccatgggagcaatccagtaagcagcat
ccctccatggcttctgcatcagctcctgcttccaggttcctgacctgcgtgagttcctgt
gctcactgcttctaatgatgaactatatggtggtttgaatgaaaatggcccccaaaagct
cgagaagatgtcagtatttgaaagcattaggaggtatggccttgttggaggaagtgtgtt
actggggatgggctttaaggtttcagaagctcaagccaggcccagtgtctctctcttcct
gctgtctgaggttctaaatgtagaactctcagctcctccagcaccatgtctgcctgcgtg
ccaccacactttcccccatggtgtcaatgaactgatcctctaaacggtaagccagcctct
gttaaatgctttgcttattaagagttgctatggtaattgtgtctcttcacaacaatagaa
agcctagctaagtcaaactgttccatggaactatgaccaaaacaaatcctttcttctcta
actacttttggtcattacagcagtagaaaccctaactgaaacagttactgatctattgca
gtgaagagacaccatgaccaaggcaacacttacacaagaaagtatttctgtgcttctgag
gactgaagatcaaggaggctacttttattgtgataatgatgactgccaatacacagttga
gagggagggtcatggaaggcttctgtgacaacaccaccccccaccccaaaaaataacaac
aaagtaacagcctatacaggaagccatcaaagagaactcttaaaagatgttatgggatgc
tgaagagcagctctccacaactgatggcttctggaggaggtgtaggaaggactcagttct
atttaagggccatgcttttggccatgctccagtgaggatacagatgccacaaggtggact
tggggttttgttttgttttgttttctttcgtcttatttttatttttttacttcttgaggt
gggggtcacaagatggggtgcatgggaggactgggaagggattgtaatcagggtataaaa
tgtgaaatttccagagaattgacaaaaatgttatgtggaaaattgttttaaaaagaaaaa
gagagagaaagcatttaactggggtggggaggtggcttacagtttcagaaggttaatcta
ttatcatcgtggtggggaacatgatagcaggcacacagacatgcatggccttggagctga
gagctttacatactgatctgctgggatagacagaaagagagaaacactggacctggagtg
ggattttgaagcctgcaagacaactcccagtgacacacttccttcaacaaggccatcgct
cctaatcattccgaacagttcttcaactgaggaccaagcatgtgtctatgaggagcgcca
ctctcattcaaaccaacacaccgctccctggatcccataggtctgtagccatatcataat
tcaaaatgcatcccgtccaacttcaacttttcccatagtttatcacagtatcagcactgt
ataaaagtccaaagttcaaactctcttctgagactcaaggcaatctcttaactgtggcct
cctgtaaaatcagaattgaaaagcagatcacatatttctggtacacgatgtcacagagta
ctcatccctgctccagagtggaggagagggagcacagtgaggggatactggactaaagca
agatggaaaagtagccgggcaaactccagttctgcatctccatggctaatatccaaatgt
tcttcagaactccagcgccttccagctctgttgactgaaacacactttgctttcttgagc
tggttccacaccctacttggcaggtaccccttggctctggcatctccaacactacccatg
cttcaccttcacagattcacacaatggcctctcccttatgcagagctccccttctatctg
cctggcctcagcagtcctccttagctgtagaaggagattccacaacccctttcttgtttt
gttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgtttt
ctgagacagggtttctctgtgtagccctggctgtcctggaactcactttgcaaaccaggc
tggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtg
tgccaccacgcctggctcctttcttgtattcttgaccccatagtcagaaccattcggcca
aacctgccaagttctgcttgccgtgactggaacctggcctcatccttggattacatttgc
aaaagcttctagttgtcggtggttgactctggtacttcaaattttcctttaattcctttt
cacaagttggaagcttagctgggtgaggtcttgtcctgaggtcactgctccatttatttc
atgtagcatcaggcttttctttaaactgttttatctccttgagcactggcgttagctcca
ttacacatccttctactccttttcttctcaaacagtacattttgcatttttccttgctca
gcttgctcttttttattgtagatctacataggacccatcactaatagtcatagaacatag
tcaatactaggctgacttgaaaCCTCCTCCACCAATGCCATT
Primer
(+)TGCGCTCATCTATCTCCCCT
(+)aatggcattggtggaggagg


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