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Mouse element [ mm2132 ]


Position: chr9:63,707,370-63,712,170 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGGGAGAGGGAGACAGAATtgagaatggcatgggcttttgaaacctcaaagcccacctc
tgagacacaccttccccaacaagaccacacctcctaatcctttcctaacagttccacaaa
ctgcagatcaaccattcaaaaaataaaagtctatggaggccattcccattcaaaccacca
cacagatgaacaggtatcaaaactattttattgaactcactaattaactagaaaactagt
aaggtgttaaaattggttcaaataagaattccaggaacacaggcaactggaaacggacca
acttaggctagccgtgtgagcagtgtcctggggcaaaagtcagttgccctccaacaggcc
atattgattcctgtctccacaacccagagtcatttgtatatgttgtaaaatagcccagag
ataacacaaggcacagacagccagaaaggagttctccagatctatccatctgtccctctt
tgctcattccaaagaccttccctctttcccccttcattgtaaaacagggctcacccatga
gggcaaagaggtggcatttgttgccgctcatgaaaaaggcattaactgtcgttctcatcc
cttctggagtatggagagggtggggtggtatccaagacataaagacacagccattcactg
aaaatagagagggtgctggcagaataagggcctcgtttcagcttggtaagtcagaacatg
tactggggatagtaccaaatatggctgcttcaggggctgcagtattacccataagtctcc
tggacagcttcaggcagctggagtctctgcccaggcaattgtgtggctctctgacaactt
cctgcaggggcggggccttgtgagggcccctccttgtgaacactgctccactaaagaaca
aatgggcccatctcataagggtctgctgcaggcaaccacagctgctctgacacaagatgg
taaaagccatgtccttcctagagaaagaagctgcccaacaccttccaggcagaggtcaga
gccctgccattctggtacccaaatcatggagctttcttgtccctcaagtctgaacagagg
gaaatgattgggccaccatatcacccaaacccagggtctggtcttggctctgtcagagtc
ttgggcaagtcatttctctgccctgagcctgtttatcagcagaaagagggaaactaaagc
acatgacctaaaagttctctctctctctctctctctctctctctctctctctctctctct
ctcagtagctcttagtttcacggtggctggtactgcacagcctgactgccgggttctgag
tccagtttagcacataacagaacaagcaagaacttgggatccagaaagaaagctgttcaa
atcccagatctgcatcttaccatccatgtgaccttgggtgcgttgttattcaacatctct
gagcctacaaggcttatccatccaataagataacgcaaaggtcaccctgaggatgaaggt
ggatagtatgtaccgcacgactaacatgcaggtggtacatggtcagtgttggtgtcctgt
cctccactcttcttcttccccacaggtccccactggctcccttcgtccgtcacacctcct
gtaccatgaatgctgtccacaatcagccccctctggctgggcactgaagggttgcacagt
ccatagctgtgcactttccagccgtgtgacaaagcaaagccaaagacatggctaaggatg
ttaagagaaaatcctgtcgaggaggagagggaaggcaaggaaggctgagctccactctgt
ggcactgctaggccaggctgctggtcctagggagcctctacaagatggaagctcggaagg
aaggtctcagcaagtgcaagggacacaagacaaagtggcagaggctacaaagcaaagggg
tgctctggggaaattgcttgttgcatagttcggggtaggcctgggaaaatcctagaagaa
ggatccaggaaaggtccagtcatgggtgaaggacctcccagtgcccacaggagcctccca
gacccacaagagtgctatgtaaacaggtcacacgctgcaggtcagagctcacacagcacc
aggagccaagtatcaggaatgtccccagtcaagataaaggacagaaagataggcagtgac
agcagaaagtccatttaagggtgtaagaaaaacatctggagcttcggacagcctgagaag
aagcggggcagtgaaggcagaaggggcactgtgtgctccgtgaaagcatccagcactaag
agtgaggacaagaccagcagggcctagagggaggaatatgtccgttttagttgctgtaac
aatatgcatccagactaggtggtctacaaaaaacagaggtacattatgtacagaaatctg
gaggctaagaagtctaagagtgtggttctgacatctggtgaaggcctactgctacatcat
aacatggaagaggctatccaacttcataactaagccagagtgtgtataacgtggtagagg
ctaccccactgtgtaattaagccagagagtatgtgtaacaaagccgttcctatagtgacc
caggaatctcctaatgaagtgaccctaacacaaaggcatccagtgatccagtaatccacc
aatggagtagccattctcactttctctgagctgagtgtcttgctttttcttcttccttct
ctttttataaattatgtataaacacttccctgtgtgctggtgagtgcatgtgcatacatg
catacacgtgtgtgtgtgtgtgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtacaagtatcctcagagactagaatcattggactccctggagctggaa
ttacggatgcttgtgagccacttaacacagatgctaggaacttaaccctggtcctctgca
agaagagcacatgctcttttttaaccaccctgccatctcgtcagccctctgctgtctcct
tgctgctgaaacaatctttttttgctcagcactgccactacaggacactgcatgacctgc
gggttctttcctcgaaggtctagttctgccttgttatctgttcccttggcaacagtcctg
cccccagctcttgtggttctatgctttagacatagaactcagatccacagtgctgctttt
tggaagtttcttgagaagtttgtcctcttccacctctgactgcagaaccgcactgcctcg
tgggtggctctccttgcctcctccagctctggtgctcccaggggatttcttggcttgtgg
cagcctcatttcagcccacttctgttttgccatctcactcattttcagtatccctgtctt
tcctgtctctaagggcagcaccgttcttggattccgggggcctccctcccgctctgctta
cacctcaatccttagttacgcctgctgcaatcccgtttccaagtgtggtgctcagtcttg
attgtcaactccatgtgatttagaatcactatggggacatccctgggcacgtctgtgaag
agtcacctacattaggttcaactgtggtgagaagaagagccaccctaaatgtggacagaa
ccctcccacaggctgcaggtccggacggagtgaaaggaagcgctagcacttgtcttcttg
cttcctgacgacaaacaggatgcccagcaacagcacctcccacagcctctggcttctcca
tcacaggggactgtgtcttttaaactaggagctaaagtagacctcccctcccttaagttg
cctcttgttgggttatttttgtcatggcattgaaagaagtttaactaaatcattaatgtg
atctcattcagaggaccctggggcaggggtgggggtggcaccatgccacccgctacaagt
ggcaaactggacagcaggacctgtccccaggaaactcatgacaccacaatagaatgcaga
atacaggtcgatggatgtcccatttacacatcagggtgtctccccagccagctggtattg
ctgcagccacccaacactgcagtcctaaggcctctgggctcctagaggtcagtgctcacc
ggcaaatcctaagactaccttacgacagcccctgtctccctgccatggtgctggcaaggg
ccctttgctggaaggtacactgtaaataaagccatttccatctgagggctggtggcagaa
gggatgagcaggagaaggattgaacgaataaaggcaaagatctttaccacccacagaaca
atacgcaaaacccaggacattcatccggaccatccataaataacccagaccacaaaaata
atgcatgagacagcttgtgtaatggtagcgtgtgaaagactggggaactttctagaatta
attttcttcattttggtttattaaaattgcgctcatctatctcccctgctaaatatttta
ttttttccgtattaatggctgcaatttcagcctgtgcctgtttctgtcattaacactgta
caaacttaatatcattagtagtttttcccttaattatgtgactagaaaagaaaaacatca
aagtttccgtgaaattggaatagtatatctaaattgtctcatgtttattttaacattaac
agtaaatgaagctaatgggcttttatattattaaaagcactcatttgtgtcttgcctgtt
ccaatacataacaaagctttaaaagatgttaaataattagttatttaatagggacgggtg
gaatagatcagaacagaagggaaagttgagggcagctaatgCAAGCTGTCTGTCGAAGGG
T
Primer
(+)gggggagagggagacagaat
(+)ACCCTTCGACAGACAGCTTG


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