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Human element [ hs2132 ]


Position: chr1:227,106,400-227,109,773 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PSEN2 - ADCK3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGGAGTGTGTGGCAGAGAAtatcagcgctgggcaaaactcatgctctcctctacttccc
aggcacacagctgggggacatctcccagactcccctgcagccagctgtggctatgtcatt
gagggccagccagtgaagcgtgggcagaagtgatgtgtgcctctgccggcctggccatta
agacccccgcatggagtggagacgacacccagggcgaccttggaagtggcatgatgaaga
gaccagagcttttgtggagcagtagtgcggaggaggagcacctgctgaaccactcactcc
ccgacagttgtgttggattgtggacctgttttctctttgcccactctgggctcatttgca
attataacctcgttgcttctgcttgagctatctttcctttgtcttggatcatgggatcaa
gcatgcgtaatttttctccaaataccttgggattcttcttcctaactcttggtacagagt
ccagctgtcccaggctcctggatgacagggagctttctctcactctcatctgaccaacag
gttcccctagcggtacataattagatccaaaatggtgcttctctttatcattttctctgc
tttctgagaaatggaattgtcattttggcaagaatttggcagaaattgtatttcagattt
taatacaattgagaaaaaaccattcataaccacagttgtctggtacgtaatgaaggtaga
tcttgccgaatggaacatccttctctgcaacttggtgggtttgaatggctgagtttggca
gaaggaatggtagagaaatagatgactctacagaataaatggggaaggatttggagttct
ggaagcaatataaaagggaaggggtaaagaggagagatgggaagatgaggagccagctgg
atcactctgtaaggggagctagcctaaaatcctaatgggaccggatggctcaagagcttt
tgagaacactggtgtccaatatttcatttgaagttgttgagtagatctcctccactcccc
tgaggggttggtgccaggctggacagggacagcacacagatggtgagacagcccacaagc
tgaattctccacttgcagaggctgagaaccagcgatgactgtaaatgtgagtctctgccc
gccttctgccctggcctccctcctgagaactggccagacttttgaggaggaatttagact
tccaaagggtggagaatagaagtttcatccagtcttatctagggaagctcccgctgacat
ccaaattacataataaacacggccagtaaaatactactgctactactatcataaaataaa
ataaggaattaagtagataggtcaggaatttggccccttaaaacactgaggccagagaga
ttacacagtgtgcctcagggatgttttgctctgttctcaggttatctggctcctattcct
tgtgtcctcagtccttgcctgggaagagagtgcagtgagcagggtagctcctcaccccct
ctcctcaggtaccaggtgctcctgggccctcaagggctcagctcttccctccgcagctcc
tgcaggggctgttgggtttatcagagactggttctgtcaaagagctgagctcaggggaac
attttgggggagtgaggttcctaccaccttggagatagctttttccaaacaaggggaagc
atttgagaaatatgttcattagtaagttcgtcagtggtcataaagatattttgtctgatg
gcagaaggcctgaatctttgttcccataaaagacttactcctctaaccagaagaataaac
gaaaggtggtgagacactggggacatctgggcagccatggagaaagagtttgtggatctg
acccactgttctcctcttgtccagataaggacgtgtgtttgtgtgttgactggtgaggac
aggaggaggtttcctgagtgcagagtgccaaagcacaaagcctgagataaaaaggcataa
atagacctagagcctgacccagagccaggcccagtgtccttgggctggtaggacttgcag
gccaggtcccagatggggagggggtactggggctgagcagctgctatggaaatttccatg
ggctgtacaccagctcttggtaagctcttgcactcagcatggcatggggaggacatgggt
tatgaaagaggcacaagacttagtccaagcttataaggagctaggcctctagagaaaaaa
ctcaggcttgccaaagcagcaagtaaacaaacaggttggaaaattttgaaacaaagttgt
aaataaggtcaaggcatggaaccagtcaagaaaagtcaatatcgtattccagttattaga
acctcatttcaccttctaaggacaatgttgaaaatacaaacttcacattaagataaaaat
gggttttattactttaaatactaataaagaggtgacaatatattagttttttaaagaaaa
aactttttataattaattgccacttgccagagtttgagattttcttaagaattcaggtta
aacttacaaaatcatttttaatacagaaatcaatgaaaaatgatccaaagacattagttt
catgcattggtaatcgttaccaaaagccttacagtgtgcaattttgtaaagtcaatgttg
caactatcccaggaattggaggtctgtgtttttcccctctctagtaagattcaggtcgtg
tgtgtgtgtgtgtacaagtgtgttcacacgtgtgcatgtgcaatgtatgaacccacaatg
ctgaccataatgctggactcccaatgcactggttaggatgcctttgcttgtatttaaaga
agccatgaagaggacatattagttcacatggctgaaaagttaagtgttagggcagccttc
taataagctttaatcagggctccagttccatttctaattctgtctgccttgccctgttgt
ggccagattccttttcgggctggcttattcacagttgcaagatgtctgtgaacagcaact
cagccaacaacaactcgtctaaggagagaggagctattgtttcctacagccgttgcatag
aagtcctgagcttccttctgattggaccaccccaggaccagtcattgagggcgtgccatg
tgctgactggctgagattcaaaaacctatcatcttgtcaagtggattgggattgacttat
atcgggggcatgatatggtttggttgtgtccccacccaaatctcatcttgagttgtagct
cccatcccacgtgtcatgggagggaactggtgggaggtaattgaatcatggagagggtct
tttccatgctgttcttgtgacagtgaataagtctcatgagagctgatggttttatAAACG
GGAGTTCCTCTGCA
Primer
(+)CAGGAGTGTGTGGCAGAGAA
(+)TGCAGAGGAACTCCCGTTT


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