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Mouse element [ mm2129 ]


Position: chr9:63,685,207-63,689,821 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAGGCTATGCAGAGCTGGAGccggatgcttaattaataactcagctacagtttaccaaga
ggaagccaagcagtccctgctctaagctttctccacctttactttgcaggagtcagtctc
tcactgaacctagagcttgccagtttgttagccagcaagccccagatacctgcgtctcga
aggcactgggattacaagtattggtctccacatcaggcttttatgtgggtgctaaggttc
aaaatgaggacttgtgaagcatttaacaactgggccatctgctctgcccctaccaagtgt
ctttgtgcatcctggttcctgtgacgttagacaatcagcctagaaaagctattgcccatt
gggcctggagatagctccctccagaggctgagtgggctcaggaagctgttctgtggcctc
tgcttctcccctttgggcctcagtgtcctcttcagggttcaataaagcatccaagtcacc
caagataataatgaccgatgacaataatgtccaagcccttaggacggcattgtaacccac
acgagcacacagaatatttccggtctttccccaggttttcagttttttgttttgttgttg
ttgttgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctg
ttgtctggttagaatccccctgtgtagatcaagcaggcctctaacttttgagtttttcct
gcctttgccaactaagctgttttaggtgactgacagacaggagccaccgtatctcctccc
cttccttccttccttccttccttccttccttccttccttccttccttccttccttccttc
tttccttccttccttccttccttccttccttccttcctttctctttctttagactattat
aactgttctttctcttgtggtgtgattagaactatcctcacacagatggaaaactgtggc
gtctggtcctgactcccagcctccttgactctggaagtgagctgagagctggatcccagc
atcctctttgctgccaggtgagacctcaggactgtcctgggcttggctggcccatggctc
ctgggactctgtctctgctaagtggcttcctgatgcagggtgatggagaactcccaggtc
agaggaaagcaatggaatactgcctcatctatcaaagcagaccacgtgaaggctggggtt
ccttggcctgaaggaaccgtggtgtgaaaagctgaaggttctctggggatggcgtctctg
cccctctaggcctccatacagggagggaaacaagtggaaatggggtgaacaactctctgt
ggggttctcagagagtctttgggcctcttgtctatgccccttctgaagtggggaagggac
agcggagatagccaggattctgagactggtttggaaggcacctcaccctgatgtggaggc
tggaccgagtcagcctctctctccttcccttcccatattacatacatatataccactaaa
cacttaaaaaactggcaaattctaccaatcactgttggttaagggctcattgtgttctga
gcttttgcctgcattaggtcactctctgtcctaaccctgtggaaatgtcctgacttcggg
ctcctctccccgaggaagaggccagttcacaggcaggttagggctgagccacacatctgt
gagtcacacagttgacttccacttcaaatggcaatctttaatcgattggtagtggctgcc
tgtagggcaatattgaaatctggaagcctccctcagatgaactagaaagagtgctatgat
tgattaatgatgcctgccagcagaggcacagggaagggtggcttgcatgctgcctatatg
ctatctgttcctaagactgtgggccccagggtgagttcttctgtcttcccacgttgacag
aacaggggtagagaaagtgctcagctcttaaaggctaaggctgacaaccaaaatgccagg
aattcagttcccaagatgacagaaaacccaccaggaacagcaaaatcatgactacaggat
tgtttttgcagtctaccaacacaacacaagtggaagggactgttcccacagttgtgcttg
caggggttagtcatcctcaccctgatgcgcagctctccctccatagctctcacctgccaa
gtgccccccggcacgctgactaaggcaggctgagtcacacggggccgcacgggggctggc
tggggtagcatgcggaggcacagagtccttcctaactgtagacagtgaatcaccgcatca
cttagcaccaggaccgctctatccatggtaccccacacactcaattgcctgaaccctctt
agttctctggactccactgtgcctcgttagctggagtgagatactcctgttcgtacctgt
ggatggcatggcctcccttctcccctcccaccccaccccaactggaagaatcctgaactt
caagggcctggcaggcccaaacccataggaactttcttttcaggggtggggatgagatta
gggtcagggaggtgtctaggaaaaccggagattagattccgactcccaggacccagatta
ggaccttggcttttcacttatagtttggaagagcttgtccaagctacttaatctctctgt
gcctcgttttccttgtcccctgaatgggaggagatcatctctgcagagcaaggttcagca
ctggcatatgggctctggcaaactatgtaggacccttgagcttcccggggacgatgcagg
gtaagcaggccaattcgtttcacagataaggtcaccgaagctcagggtcaaacccacagg
taatcatttcattccagatcctgggctcagcccaggagaatgtcaggataggcagtaaga
tgtgacggcaagtgggacgggtgttacagccatacagaccatcgagagagattccctgga
gggcagtggacggtggcgcaggcctttctttaatctcagcacccacgaggcagaggcggg
cagatctctgagagtttacagccagcttggtctacacagcgagttccaggacagccaacc
agggctacataatgaagaaaacctcttacaaaaaaagagtgaattcttggaccacttggc
gggtggaggacataagccagaattcgggcataagccctcccacatccagagcacccccga
attggggagagtctgcttacacccaagggcacaacaatctgtcccgccctcgcttaacct
cctagtcccacctcctgccagaagtgcaagctctctgtctggccagtgaggccatgtcaa
actccagtccccaaacccaaactccaaccctaaagcagcctcctcacgtccctcgtcctc
tccctgcctttcccccttctctcagggtctctgcctagggtcgccactgagtcaggctca
ctcagactgcacctcatcacttaccttgtctgtgtgagcttctgtccccctcagggtagg
caggctggggcccccagcagtggcacaggctgggtacacatgtcaagaggaacgagcgcc
ttgtcggttggtgtgcaacccagaaaactgctcttctcttgaggcctcaccttccaccct
cgtggagtcgggttgcctcaagctacagtggccactctctacccagcctcaaagtgactt
caccgagcagctgcagacgggctccactctcccgcacactcccaggcaggcccatcttgc
ttgccagtcgctgataatgtgttttgtcaacgagagattcatttggaagatctttgagcg
tgggatgggagagtgggtctcaaacctgtgcttgaggccagggctggagatgtctatggg
ctgcggttccgggacgtgtaaggttgaaaggcaatggaggtctgcacatgcgtaatgaaa
cctaatttggctgttacccttgcggtccactcctgagaggcggggcctgcattctgaagc
tgaaaggccactaaacaagagcaggtgaggtgggttaagtcagcaaagttgaggcaggtt
ttccttgggtcaccgaatccccccaggttgtacctggaacgctattcccggatccccctc
cttctacgcctgcatggcggcttccagcccagccctctgagtctccatgagacaagtgtt
gtaacctagccctaagctcccaaacctctatataaggtgtggggacctgtacactgttac
ccgcagctcttcctggagtgcccaagtatctgagcacccccaaagaacagctctgattcc
tgttacccactttagtgagctgattgactcagaacggccccaggtcccttattgaacagg
catccacggagcccatcgctgagccaggggctggagaaatgtgcattgatttgttccagg
gtgcctagccaacccttttagtgactttcctctggtatctacatgtcagcaatcttcctc
agagcatcttgtccctcaggtctcccctttaaagccacctttgaggctttacctgctaag
ggcctggaagaatccttccaacttcaggaactgtatcagtcagggaaacttggttatact
gttgtaacaaatatcccttccacttgtgaagctgaTCCCAGGTTTGTCTCTTGCC
Primer
(+)GAGGCTATGCAGAGCTGGAG
(+)GGCAAGAGACAAACCTGGGA


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