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Mouse element [ mm2128 ]


Position: chr9:63,662,732-63,667,358 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGTGATGGCGAAGGTTCTGgttaggtgctctagtttctattgctatgattaaaataccc
tgacattgtggaggaacatttgtctgtttacaattccaagttacagcccatcgaagggaa
gtcaaaagagagaaactagtcacatcgcatcttcctgctagagcagagaggaacgaacat
gcccacgcctccttcttgcttgtgactcagctttctttactctcatacagagaaaggtcc
agcctatagaatggtaccacccacagtgggctgggattaattaatgatcaggagaattcc
ccacagacatgcccagatgataacctcatctagatcattccttgagactcttttcctaag
cggcactaggttatgacatgctaacatcaaagccatcacacagggatgcgattgggattt
gcctggagatgaagggttgatttctagtacagcctcttccacatggcttttggttagagg
ctaagctcctcattggccagccaaggtatcagagtccctcgccacatgagtctttccaga
gggctgcttggcattgtagctagctaccctcaaaacatgtgatgctttaaaaaaagccta
aggcggaagtcacaacatcgtttattatctcgcctttgcattgctgaaccactgctttcc
actgattctcttagacacagaggatggtccacacgttgaacgactgactctcttagacac
agaggatggtccacacattgaacgactgactctcttagacacagaggatggtccacacat
tgaacgactgactctcttagacacagaggatggtccacacattgaacgactgactctctt
agacacagaggatgtgtccacacattgaacgactgattctcttagacacagaggatggtc
catacattgaacgactgactctcttagacacagaggatgtgtccacacattgaacgacta
gcaaggattacagtctaatcctgaggatgggcagaaacaccttggagtttgacgaataca
atggaatgcttcctcctaagacctagaacaagaacaggatgtagactgtcactatttcca
ttctacatgatactaaacgtctagtcagtgcaatatggcaagaaaaagaaattacatcca
tgtagataagaaaggacaaaaacaaactcttaatctgcagatgacatgggtagaaaatta
aaaggaaaacacacacacacatacacacacacaaaatatctcagtattagtccatgaatt
taggaaaatcacaggattattaaatatattaaatatcgtatttatttaagttcattgaaa
taaggtctctatctagctgaggctagcctaagactcactgtatagcttatgttgccccag
aacttaaaatcttcatgtgtctttctcccaaatgtggggattaaaattaaggaggtatac
caccatgcccagttaatatcaatattttgatagccaattgtagcttatatactagcaaca
gttggaaattcgaaatgtgaaagcaaaatcctcgtttaatgaggtggcaggtatctgcag
cagaactgtcacagcgttctctgctgacaggagctgagtgcccacagagcctctgctcac
cttcatggtggctcttcccttcagtctaacccagtggcatttctacagttacaattcttt
ttaaaactctgtgggccaccaaaatgcaaagtatgggtctggagacatggctcagtgata
aggagcctgctggtcagtttctattacatggttggtggctcacaaccacctgtgctctgg
tgctttccagagcatgtggcgccaccttctggcctctatgggcactgcactcatgtgcac
aaacccacagaaaggtacacacaatttttttttaaaaatcaatttattcattttaaaaaa
tatgaaacatggaggaacagaaccaacaaaatatggacaggatctttacactgaagacgt
tgatagcattatggaagcaatggaggaccatccaagtgacatcactctccctgggtcaga
agtcttgacatcaggaagggctagttaatcctcctaaggccaagctacacatttttcaaa
tttttggaattatttatttatctatttagtgtatgtgagttcactgttgctccttcagac
acgacagaagagggcatcagaccccattacaggtgtctgtgagccaccatgtgggaattg
aactcaggacctctggaagagctgttagtgctcttaaccactgagccctctctccagccc
ttagtagtctttttatgttaaaaaaaattaatggattgcagaaaaagacatggtatagtc
caaacaatttcgtgaaatgtggaggttattgaaactgtgctgtttagtttccaaatccat
aaaacttcagtaatcaaaccagtgcagaattagcatcaaatggattaaatactgcaacac
agcagagtattgaaacatactccatatgtactcaacttgttaaaaagttatattttttat
ttgatatgtatgagtgtttagctcaaatctctgtgcaccacagacatgcccttggatgtc
gtcatcatcatcattattatcattattacttattggtgttttgcctgtatatatatctct
gcatcatatgcactgttacctgtagagcccagaagagagtatcatgtcccctggaatcat
agttacagacagttgtatatcatgtgggtgctgggaattgaatccaggtcctctggaaaa
gcagccagtgctcttaaccactgagctatctcttcagccctacatccatgttcttaatgg
ctatttgtatgttctatctggagaaatgtctacaaattctttgcccattttccaaccata
ttttcttttttttttttattactgcaagattttctctttttttggtgtttttgatatacc
cttaatgtaagtccttttccagatatgtgacttacaaatgttttcgcccattccatgcct
tgcctttttgctttctggaagctattctttccagccccaaacatttaagtttcgatgtga
agactgtgaacactctaactgctgctcagacttcaggagatgccactaccatttccttgc
aaataccatgttaaggaatggaaaggcaagctgcatgcagacttatgtgtaaatccttaa
cagaatttaacgttgacttgtattccagatagataatctcttttcacatcaattcaatga
agagaaataacttgggtttaaaatgggcaagagatttgggcagcttctccagagactaaa
caccaataccaatcacatgaagaacgaaaaatccttggcattattaatcctcaaagaatg
aaatgcagtcctgcagcacagctcatacccctgagacaggctggcattacagagcctgac
cacacatgtgttggcaagcatgtggaatgcagacattctgccgcgtgtgcactgctggtg
gggatggtgtcacatgggacagacacttgggaaaacagtttgctggctatgaaaaagtta
aacacatatttgccttctattctggccactttatgctgaggtatcacacaagtgaaataa
atataaaagtccacataaaaactctgtgcatgaatgcttataaaatgctataaatataag
catataactcattcattcattcattccatacagagcctcactctgtagtcaagctcacta
tgtagcccaggctatcactctcaagctcactatgtagcccaggctatcatactcaagttc
actacatagcccaggtcttgaattctcggtcctccagtcttggccttgaaggtacctatc
attcaagatgattttttttttacaagtatgtttgcctgtgtttatgtctgggcaccatgc
atgtgcagggtcctgggggaccagaagagggcagtggatcccttggaactggagtaacag
agagttgtgagccatcaggtaggtgctgggaaccaaacccagttcctcaaaaagaacaac
aagtgtccttactcactgagcaatccttccagcacctccaagatctacctttaaaatggt
ttgtgaggaaggtcatgctaagttataactcatgtggtgtctgtggcccagtgagcagtg
gagaaaacgtaaccagctgtgtcctgatggctccttagctccccacagctgctttatgca
atctattgctacatgaaatgcagaagttatttgtgcgaaaacagcataactatgctaaga
aataaaaatgaatctgaaaattcaatcatgatctcctttctggacagatcaactcattta
ttttcccttgttcccatctggcacttgtctgcatgcataaaacatttttacacagctata
aaaatccaattttgcattcaactctgtgaaaacaattgtcatatcacaggctggttccca
ctctcctgcttcatcttctcaattatttttaatgactgtgtcagtcactctgcagatctg
tcctcttttaacattgcctctgttgctggacataaatgggtttttgttgttgttactctt
ttatttttacagttactatgagaaaacaacattgcagcgaggctggcAAGATGGCCCACC
GGTAAAG
Primer
(+)aggtgatggcgaaggttctg
(+)ctttaccggtgggccatctt


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