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Mouse element [ mm2127 ]


Position: chr9:63,653,875-63,658,735 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGGGCCAGTTTGACTTTGTctctttgttcctggagttactagagtcagaacctgggctt
tgtcagacctagcaagccaagctcagccatccatccacagtatccaacagacaggtaata
gtgaaaaggagaaacggggatttactcgtgtggccatgttgggaaaaggaacaagaaagc
tggtggaccacacgagtggaccctgggggcctgacatgagggttaggtttacacagatgt
cgagaggtatgcatggctaagtggtcattgtcaatgtgcgaagatcccatcatcctttgt
tggctctagtctcttctgtgggctgacaaatgctcaggacagtgggaagtgtcttcctag
aggaaagttctgccttggttggtttcagcaccttcctgctcccactatataacactacgg
aagattcaattccttggggaccattgttttaatagtctgatggccaaagagagggactca
ggttttctgtagcttaaatgtgttcctatcaggatgccctcatcttcatcctccccaggc
aactgaactcctccattatgagtaagcacacaaccatcccttcattccttccataactca
ctatggagtacccattctgtgctagatttgaaccccaggaacccttgttacccactaaac
ataataactcttaggaggaagaagaactctgatgtcatttggaatgggacaaggtggtac
agtaccccatgtgaaaaggtttggcagcaaggtaggattaagcactggcctggccaagcc
atcacagaggccagtcttgaacaaacaggtgaaccaaacaagccaaagagaattgcaaag
acaggtgactgtgtattttctaaatgtgtcatgaaatgccacctttagggactgaggaaa
tggctcagcggggaaagtgctttctgtgcttagagacttgagagccgatctccaacacca
acaaaaacctgacagagcaacagacatctgtaaccccagggcttgggggagagggagtag
ataaaggggcttcctggccagccagcctagccttaagagcaagcccaggttcagctagag
agcttatctttttaaaaatgggggagtataaaagaaaaagatactatcgacctccgcctt
cccacaggcacatgcacacacatacattttatagatctccgatgttattttgttttgtac
cttctataggctggtggtgcaagcaggtcttggggacctcaaaagtctgaattgggtgga
acaagagagcagctgagaaaatccaggacctcacatacgtgggctgagccctgagctggg
gtcagattctggtgggaggagcctactgtgcactaaggacttgtgcatggccgttctttg
gtgcctcgtgggtgtacttcatgttatacttagctcatcactgctatggctcagatcatt
tcctgaagtagataaaggacaccagaatccaggattgctaagcaccatcacaggtagctt
ctcggccccggagctgtgtaaatacttgatgaatgaatgaatgaatgaatgaatggtcat
tgaatgaatggcactttggattcccaagtccataggcttatttactggtagctggcagaa
aaggtgaagattttccaagcccagcactaacccagcatgatgtgtgtgtgcatgtgtggg
ggtgggcagatgcacatgtgtgtgagcactttgtcagctcctttaagcctcattgggaca
cataaccaaactaaagcagaagacaaagcccttgcccggccctggaagggtcacaccctg
gaaagtatgtgctcagccagcagcccggctcaggcttcttctgatttctccatactctct
gctgttttgttgggtgccggttcaccgtatacactggtgaaatctccacacgcaagcatc
aacctgccgtggtctgttggtttgcagttctgttgtttctggtgagcgccatactttttc
atgttttcatttcccatctgtacttctgtataaactgtctgttcaccttcactgcttact
gagtagaatctcgatgctgctgttagcttttagttaaaaaataaaaagcacaaaattaat
atgctttcaagttccagcagtctgttagcccttccatgctgttattttcctcttgtggtc
ctgctcttttctccaacaaaaggtttttatttgtgtgtgcacacacgtggctatgtatgc
ctgtgtttgtgtgtgcacacacatatgtagatgtatgtgtggaggccagaggtcagtatc
taggctctttctaaatcatgccccatcttgtttttcaactttaaaaaaaggtttattttg
tgtgtgagttttgcttgcatgcttgtgtgtacactccatgtgtgcctggtacccgaggaa
gccagaggagagcatcagatctcctggaactggagttgcaggtaactgtgagctgccatg
tgggtggagaactgaacccagatcttctgaaagagcagccagtgctcttaacctcggagg
catcttgacatccccagcatttctgtttgcttgtttatttgtttttatgcttcgtttctc
agatatgctgcagaaaaaaaatactacagggtgtaacttttctctgcataacaattattt
ccagaacacttcattcatagccatcgctttccttactgttagtttacttccagtgtcact
atatactgaattagtttgggcatctactgatcattattctctagtaccatacggtttgga
tcattgttgcttcataatatgttgtgaaatctggtagactaaacttgttctgttccttta
aaaagacttcagtcttttccatcaatttgagcacagacttccttgctacttatcatgcac
tagccagacatcctttaagagactgaataggtagtgcattatctctatggtaaccagggg
aagactgctgcctttgttagtaccagtctttggggcatgtggacttgtggtcagtatttt
catctttatttttctaattacggttctataacctttttaaagaaatgtcatggggcttgg
gagatggttcagttggtaaagtgcttgccacgccaagtacaacgatctgagttccacccc
cagtgcccatatgaaaagccaggctatggcacatgtctgcagtgccagggctgggaggtg
gggacaggaggatgcagggtttgctggccagcaagtctagtctaaccaatgaactccagg
ttcagtgagatgctctgtctcaaaaaaataaggtggggagaaattgaggaagacacctga
cattaatctctgacttacacacacagatacatacagacaggctcacacacacacacacac
acacacacacacacacacacacatacacacacacacacacacacacacacacacacacac
acacacaattttataatttgtggtaaaccatgaccacacattgtatgtctatcattcatt
ggggattggcctgcattttctggcatgccctatttgccagaatgggagctcactgctcac
gggaaggtttgaaaggtttaggaactgtacactcccactggggcatgactctgatagcca
taggcaatgggaagatggggcatgggatggaaaggcccttggggactataggagtcctcc
aaaagggagaggggccaccaccatgtgaatggacttggcctgtcacattgccctacaggg
gagttgggaaggaggcctgtttggcccaggagctctgttcctgacatctcctagtgagac
tatttatagtcccaaggtccttcgtaaagaccaccggccaatgtctacaatgtctatgct
actctccatctgtttaatggtcaggatttgatgctggagtgcaaaggaggcaggaggtaa
caacatattcttttttgttgctgttgttattggctggcctcaaacttgttactcagctga
aaatgaccctgagtttctgaccctcctgcctccacctcctgagtgtttggattacaggca
tgtatcatcacactgagtgcttggattacaggcatgcatcatcacactgggtctatgcca
cgctgctgctgaaacctagggctgcacgcatactgggcaagcactctgttagtcaagcct
cacccccagcccctgtgatttcttttgaatgctcatgaaacatgtcaaattcccttgttg
aatcctcagcacagtctggtgtagtacatatcagccaccttgagcacagggaagcaaggc
tgcaggaggctaggggtgaaaggttaggggtgaaaggtcacaggcacagagccattgagc
agtgtcctcaaagcctgcattctttccacgagcagcacttttggagtgcagcctctcagt
gagtggccagggatcttgggaaggaatgaagcaagaggaaaccttaagtctgggctgctg
tatcagaccctcattcctccaagaacctagtgtcagtcacactaagcctctctctaggca
aaatcacctgtctgctctctggtccccgccgtctgtccgccgtctgtccgtctgtccgtg
cctgtctgctcagtcctcccggcccaggcttttaagcttcagacttgcacaggtgcttcg
tgctgctaacctagtaggatgtcgcctgtcccatggagccagaatgagcccccctcccct
catcccaacctgtgcctctctctcattccctctcgtgatctcctctatcctgaccttcat
tcctcttgtgagtcattccccaagagtccccaacgtgatctcaaagtgtttgagccagtg
tcttgcagtggggctcggtgagcatcttgggtgaaaccctgTGAGTTTCTGGGAACCTGG
C
Primer
(+)TGGGGCCAGTTTGACTTTGT
(+)GCCAGGTTCCCAGAAACTCA


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