Mouse element [ mm2127 ]Position: chr9:63,653,875-63,658,735 (UCSC browser) Source: Lawrence Berkeley National Laboratory Flanking genes: Smad3 - Smad6 Timepoints: e11.5 This sequence did not show observable enhancer activities at E11.5 We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution. Fasta sequence TGGGGCCAGTTTGACTTTGTctctttgttcctggagttactagagtcagaacctgggctt tgtcagacctagcaagccaagctcagccatccatccacagtatccaacagacaggtaata gtgaaaaggagaaacggggatttactcgtgtggccatgttgggaaaaggaacaagaaagc tggtggaccacacgagtggaccctgggggcctgacatgagggttaggtttacacagatgt cgagaggtatgcatggctaagtggtcattgtcaatgtgcgaagatcccatcatcctttgt tggctctagtctcttctgtgggctgacaaatgctcaggacagtgggaagtgtcttcctag aggaaagttctgccttggttggtttcagcaccttcctgctcccactatataacactacgg aagattcaattccttggggaccattgttttaatagtctgatggccaaagagagggactca ggttttctgtagcttaaatgtgttcctatcaggatgccctcatcttcatcctccccaggc aactgaactcctccattatgagtaagcacacaaccatcccttcattccttccataactca ctatggagtacccattctgtgctagatttgaaccccaggaacccttgttacccactaaac ataataactcttaggaggaagaagaactctgatgtcatttggaatgggacaaggtggtac agtaccccatgtgaaaaggtttggcagcaaggtaggattaagcactggcctggccaagcc atcacagaggccagtcttgaacaaacaggtgaaccaaacaagccaaagagaattgcaaag acaggtgactgtgtattttctaaatgtgtcatgaaatgccacctttagggactgaggaaa tggctcagcggggaaagtgctttctgtgcttagagacttgagagccgatctccaacacca acaaaaacctgacagagcaacagacatctgtaaccccagggcttgggggagagggagtag ataaaggggcttcctggccagccagcctagccttaagagcaagcccaggttcagctagag agcttatctttttaaaaatgggggagtataaaagaaaaagatactatcgacctccgcctt cccacaggcacatgcacacacatacattttatagatctccgatgttattttgttttgtac cttctataggctggtggtgcaagcaggtcttggggacctcaaaagtctgaattgggtgga acaagagagcagctgagaaaatccaggacctcacatacgtgggctgagccctgagctggg gtcagattctggtgggaggagcctactgtgcactaaggacttgtgcatggccgttctttg gtgcctcgtgggtgtacttcatgttatacttagctcatcactgctatggctcagatcatt tcctgaagtagataaaggacaccagaatccaggattgctaagcaccatcacaggtagctt ctcggccccggagctgtgtaaatacttgatgaatgaatgaatgaatgaatgaatggtcat tgaatgaatggcactttggattcccaagtccataggcttatttactggtagctggcagaa aaggtgaagattttccaagcccagcactaacccagcatgatgtgtgtgtgcatgtgtggg ggtgggcagatgcacatgtgtgtgagcactttgtcagctcctttaagcctcattgggaca cataaccaaactaaagcagaagacaaagcccttgcccggccctggaagggtcacaccctg gaaagtatgtgctcagccagcagcccggctcaggcttcttctgatttctccatactctct gctgttttgttgggtgccggttcaccgtatacactggtgaaatctccacacgcaagcatc aacctgccgtggtctgttggtttgcagttctgttgtttctggtgagcgccatactttttc atgttttcatttcccatctgtacttctgtataaactgtctgttcaccttcactgcttact gagtagaatctcgatgctgctgttagcttttagttaaaaaataaaaagcacaaaattaat atgctttcaagttccagcagtctgttagcccttccatgctgttattttcctcttgtggtc ctgctcttttctccaacaaaaggtttttatttgtgtgtgcacacacgtggctatgtatgc ctgtgtttgtgtgtgcacacacatatgtagatgtatgtgtggaggccagaggtcagtatc taggctctttctaaatcatgccccatcttgtttttcaactttaaaaaaaggtttattttg tgtgtgagttttgcttgcatgcttgtgtgtacactccatgtgtgcctggtacccgaggaa gccagaggagagcatcagatctcctggaactggagttgcaggtaactgtgagctgccatg tgggtggagaactgaacccagatcttctgaaagagcagccagtgctcttaacctcggagg catcttgacatccccagcatttctgtttgcttgtttatttgtttttatgcttcgtttctc agatatgctgcagaaaaaaaatactacagggtgtaacttttctctgcataacaattattt ccagaacacttcattcatagccatcgctttccttactgttagtttacttccagtgtcact atatactgaattagtttgggcatctactgatcattattctctagtaccatacggtttgga tcattgttgcttcataatatgttgtgaaatctggtagactaaacttgttctgttccttta aaaagacttcagtcttttccatcaatttgagcacagacttccttgctacttatcatgcac tagccagacatcctttaagagactgaataggtagtgcattatctctatggtaaccagggg aagactgctgcctttgttagtaccagtctttggggcatgtggacttgtggtcagtatttt catctttatttttctaattacggttctataacctttttaaagaaatgtcatggggcttgg gagatggttcagttggtaaagtgcttgccacgccaagtacaacgatctgagttccacccc cagtgcccatatgaaaagccaggctatggcacatgtctgcagtgccagggctgggaggtg gggacaggaggatgcagggtttgctggccagcaagtctagtctaaccaatgaactccagg ttcagtgagatgctctgtctcaaaaaaataaggtggggagaaattgaggaagacacctga cattaatctctgacttacacacacagatacatacagacaggctcacacacacacacacac acacacacacacacacacacacatacacacacacacacacacacacacacacacacacac acacacaattttataatttgtggtaaaccatgaccacacattgtatgtctatcattcatt ggggattggcctgcattttctggcatgccctatttgccagaatgggagctcactgctcac gggaaggtttgaaaggtttaggaactgtacactcccactggggcatgactctgatagcca taggcaatgggaagatggggcatgggatggaaaggcccttggggactataggagtcctcc aaaagggagaggggccaccaccatgtgaatggacttggcctgtcacattgccctacaggg gagttgggaaggaggcctgtttggcccaggagctctgttcctgacatctcctagtgagac tatttatagtcccaaggtccttcgtaaagaccaccggccaatgtctacaatgtctatgct actctccatctgtttaatggtcaggatttgatgctggagtgcaaaggaggcaggaggtaa caacatattcttttttgttgctgttgttattggctggcctcaaacttgttactcagctga aaatgaccctgagtttctgaccctcctgcctccacctcctgagtgtttggattacaggca tgtatcatcacactgagtgcttggattacaggcatgcatcatcacactgggtctatgcca cgctgctgctgaaacctagggctgcacgcatactgggcaagcactctgttagtcaagcct cacccccagcccctgtgatttcttttgaatgctcatgaaacatgtcaaattcccttgttg aatcctcagcacagtctggtgtagtacatatcagccaccttgagcacagggaagcaaggc tgcaggaggctaggggtgaaaggttaggggtgaaaggtcacaggcacagagccattgagc agtgtcctcaaagcctgcattctttccacgagcagcacttttggagtgcagcctctcagt gagtggccagggatcttgggaaggaatgaagcaagaggaaaccttaagtctgggctgctg tatcagaccctcattcctccaagaacctagtgtcagtcacactaagcctctctctaggca aaatcacctgtctgctctctggtccccgccgtctgtccgccgtctgtccgtctgtccgtg cctgtctgctcagtcctcccggcccaggcttttaagcttcagacttgcacaggtgcttcg tgctgctaacctagtaggatgtcgcctgtcccatggagccagaatgagcccccctcccct catcccaacctgtgcctctctctcattccctctcgtgatctcctctatcctgaccttcat tcctcttgtgagtcattccccaagagtccccaacgtgatctcaaagtgtttgagccagtg tcttgcagtggggctcggtgagcatcttgggtgaaaccctgTGAGTTTCTGGGAACCTGG CPrimer
|
For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.